PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30170.m014128 | ||||||||
Common Name | LOC8275812, RCOM_1596360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | DBB | ||||||||
Protein Properties | Length: 309aa MW: 33843.9 Da PI: 6.9176 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.9 | 3.6e-07 | 4 | 46 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40 C+ ++++e++ fC+ ++ lC+ C + H+ H+++ 30170.m014128 4 QCDVCSKEEASVFCTADEAALCDACDHSVHHAnklaskhHRFC 46 7****************************64558888988876 PP | |||||||
2 | zf-B_box | 27.4 | 7.1e-09 | 56 | 92 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 ++C+ ++ek++ fC++++ lC+dC + +Hk Ht 30170.m014128 56 PICDVCQEKRAFVFCQQDRAILCRDCDVPIHKAneHT 92 79*****************************878865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.893 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.41E-7 | 3 | 47 | No hit | No description |
SMART | SM00336 | 2.7E-4 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.954 | 53 | 100 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.1E-14 | 53 | 100 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.11E-10 | 56 | 100 | No hit | No description |
Pfam | PF00643 | 7.7E-7 | 56 | 92 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MKIQCDVCSK EEASVFCTAD EAALCDACDH SVHHANKLAS KHHRFCLLHP SSKSFPICDV 60 CQEKRAFVFC QQDRAILCRD CDVPIHKANE HTQKHNRFLL TGVKLSATSV IYMPSSSSSV 120 PSGCDLVPDS KSQQQQSAKK PSNSNPPSST FKTLSPNSTL SKTSPSSNTV VNKSGDNSVI 180 NNEGIGSVSS ISEYLMETLP GWHVDDFLDF PSIPFGFCKP DDEILPVGGG DLGDVTNPFS 240 SEMGIWVPQA PIPPHPSQHY QQMVSQVGFK ETKEATNTKP NNRRWSDDAF TVPQVSPPSI 300 GSKRSRSFW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30170.m014128 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002510475.1 | 0.0 | B-box zinc finger protein 21 | ||||
Swissprot | Q9LQZ7 | 1e-87 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | B9R832 | 0.0 | B9R832_RICCO; Salt-tolerance protein, putative | ||||
STRING | XP_002510475.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1448 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 5e-84 | salt tolerance homolog2 |
Link Out ? help Back to Top | |
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Phytozome | 30170.m014128 |
Entrez Gene | 8275812 |