PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30138.m004055

Common Name

LOC8263409, RCOM_1471540

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

NAC

Protein Properties

Length: 361aa MW: 40814.2 Da PI: 8.1076

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30138.m004055	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.6	3.9e-56	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeel+++yL kkv + +++ ++i +vd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ + 30138.m004055 16 LPPGFRFHPTDEELISHYLYKKVLDISFSS-RAIGDVDLNKSEPWELPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYR-G 109 79***********************999.89***********888999************************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrle 129 ++lvg+kktLvfykgrapkgekt+Wvmheyrle 30138.m004055 110 KSLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 142 99***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-64	13	166	IPR003441	NAC domain
PROSITE profile	PS51005	60.071	16	166	IPR003441	NAC domain
Pfam	PF02365	1.2E-29	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MENISGLVKE DDQMDLPPGF RFHPTDEELI SHYLYKKVLD ISFSSRAIGD VDLNKSEPWE 60 LPWKAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIYRGK SLVGMKKTLV 120 FYKGRAPKGE KTNWVMHEYR LEGKYSIHNL PKTAKNEWVI CRVFQKSSGG KKTHISGLVR 180 LGSFGNELAP TVLPPLMDSS PYTGKTKPVA ESAYVPCFSN PIDIQRNQQE SIDTAFNHHQ 240 LLSVSSNSCD IFPRFPFPNS FYSTQSLPLS ANLQYPSSGS IPENSILRVL VENQGSNVKQ 300 QSFKTEREMI SASQETGLTT EMNTEISSVI SNLEMGKRPF DDQGLPSTCG GAVDLDCLWN 360 Y

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MENISGLVKE DDQMDLPPGF RFHPTDEELI SHYLYKKVLD ISFSSRAIGD VDLNKSEPWE  60
LPWKAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIYRGK SLVGMKKTLV  120
FYKGRAPKGE KTNWVMHEYR LEGKYSIHNL PKTAKNEWVI CRVFQKSSGG KKTHISGLVR  180
LGSFGNELAP TVLPPLMDSS PYTGKTKPVA ESAYVPCFSN PIDIQRNQQE SIDTAFNHHQ  240
LLSVSSNSCD IFPRFPFPNS FYSTQSLPLS ANLQYPSSGS IPENSILRVL VENQGSNVKQ  300
QSFKTEREMI SASQETGLTT EMNTEISSVI SNLEMGKRPF DDQGLPSTCG GAVDLDCLWN  360
Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-55	8	172	6	171	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-55	8	172	6	171	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-55	8	172	6	171	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-55	8	172	6	171	NO APICAL MERISTEM PROTEIN
3swm_A	9e-55	8	172	9	174	NAC domain-containing protein 19
3swm_B	9e-55	8	172	9	174	NAC domain-containing protein 19
3swm_C	9e-55	8	172	9	174	NAC domain-containing protein 19
3swm_D	9e-55	8	172	9	174	NAC domain-containing protein 19
3swp_A	9e-55	8	172	9	174	NAC domain-containing protein 19
3swp_B	9e-55	8	172	9	174	NAC domain-containing protein 19
3swp_C	9e-55	8	172	9	174	NAC domain-containing protein 19
3swp_D	9e-55	8	172	9	174	NAC domain-containing protein 19
4dul_A	9e-55	8	172	6	171	NAC domain-containing protein 19
4dul_B	9e-55	8	172	6	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30138.m004055

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002514736.1	0.0	NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-164	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	B9RLW7	0.0	B9RLW7_RICCO; NAC domain-containing protein 21/22, putative
STRING	XP_002514736.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-167	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	30138.m004055
Entrez Gene	8263409

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]