PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30128.m009030 | ||||||||
Common Name | LOC8275009, RCOM_1437550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | C3H | ||||||||
Protein Properties | Length: 448aa MW: 48714.1 Da PI: 8.3281 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.6 | 1.6e-11 | 58 | 84 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p 30128.m009030 58 PGEPDCSYYIRTGLCRFGATCRFNHPP 84 5789*********************97 PP | |||||||
2 | zf-CCCH | 39.2 | 1.2e-12 | 105 | 129 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ 30128.m009030 105 QPECQYYLKTGTCKFGATCKFHHPK 129 799********************96 PP | |||||||
3 | zf-CCCH | 36.9 | 6.2e-12 | 153 | 175 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C +++rtG+Ck+G++CkF+H++ 30128.m009030 153 ECAYYLRTGQCKFGSTCKFHHPQ 175 7********************97 PP | |||||||
4 | zf-CCCH | 37.9 | 3.1e-12 | 309 | 335 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ 30128.m009030 309 PGQPECQFYMKTGDCKFGAVCRFHHPR 335 5789*********************96 PP | |||||||
5 | zf-CCCH | 38.9 | 1.4e-12 | 355 | 381 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G Ck+G++CkF H++ 30128.m009030 355 PGEPLCIFYSRYGVCKFGPSCKFDHPM 381 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.2E-4 | 57 | 84 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.976 | 58 | 85 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.6E-8 | 59 | 84 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-5 | 62 | 85 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.5E-4 | 63 | 83 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.14 | 102 | 130 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.1E-6 | 102 | 129 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.7E-10 | 105 | 129 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-6 | 106 | 131 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.7E-5 | 108 | 128 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.225 | 148 | 176 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.9E-5 | 148 | 175 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-6 | 151 | 176 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-9 | 153 | 175 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-4 | 154 | 174 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.596 | 308 | 336 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.8E-6 | 308 | 335 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.7E-9 | 310 | 335 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.09E-5 | 312 | 338 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.9E-5 | 314 | 336 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.671 | 354 | 382 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.2E-6 | 354 | 381 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.2E-10 | 356 | 381 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-5 | 357 | 381 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-4 | 359 | 379 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MDFDAGIPMS RTAPPPPPPP LPVTEDPSLS ASLNEDAMWQ MNLRSSETMD SGPYPEHPGE 60 PDCSYYIRTG LCRFGATCRF NHPPNRKLAI AAARMKGEFP ERIGQPECQY YLKTGTCKFG 120 ATCKFHHPKD KAGIAGRVSL NILGYPLRPN EIECAYYLRT GQCKFGSTCK FHHPQPTNVM 180 VPLRGSPVYP TVQSPTTPGQ QSYTGGVTNW SRASFITSPR WQAPSSYTPL ILPQGVVSVP 240 GWNAYSGQLG SVSSPEGQQQ TGNSQIYGTS RQSESVNTGS QGTLSPLRAG SMPVGFYALQ 300 RDNVFPERPG QPECQFYMKT GDCKFGAVCR FHHPRERLIP APDCVLSPIG LPLRPGEPLC 360 IFYSRYGVCK FGPSCKFDHP MGIFTYNLSA PSSADAPVRR LLGSSSGSAA LTLSTEGLVD 420 AGSTKPRRLS LSEPRQMPSG DDNIDTEG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30128.m009030 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002512627.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | B9RFV8 | 0.0 | B9RFV8_RICCO; Nucleic acid binding protein, putative | ||||
STRING | XP_002512627.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5321 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 0.0 | zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | 30128.m009030 |
Entrez Gene | 8275009 |