PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30115.m001193
Common NameRCOM_1407560
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 176aa    MW: 19891.4 Da    PI: 7.9366
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30115.m001193genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-19101151256
            AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                    +++GVr ++ +g+W+AeIrd +     r +r +lg+f t+eeAa+a+++a+ k++g+
  30115.m001193 101 KFRGVRLRP-WGKWAAEIRDpW-----RaARKWLGTFNTKEEAARAYDRAAIKFRGH 151
                    89*******.**********88.....77**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-23101160IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-30101160IPR001471AP2/ERF domain
PfamPF008477.5E-13101151IPR001471AP2/ERF domain
PROSITE profilePS5103223.485101158IPR001471AP2/ERF domain
SMARTSM003807.1E-35101164IPR001471AP2/ERF domain
PRINTSPR003671.1E-12102113IPR001471AP2/ERF domain
CDDcd000186.03E-31102160No hitNo description
PRINTSPR003671.1E-12140160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MELPNRLSKE QEDSIIISTL QHVLSGATSS TDEISSFIPI LQGSGTCPVC NMDSVDCLGC  60
NFFGTVQEDV EEEEAEAVAE VEETAGTSER KNKIKKKKKN KFRGVRLRPW GKWAAEIRDP  120
WRAARKWLGT FNTKEEAARA YDRAAIKFRG HKAKTNFPLS NYVQMQTKES ENKEMS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2098159264ATERF1
3gcc_A3e-2098159264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193100IKKKKKNK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30115.m001193
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025013917.11e-129ethylene-responsive transcription factor ERF109-like
SwissprotQ9SZ066e-31EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLB9SC531e-128B9SC53_RICCO; DNA binding protein, putative
STRINGXP_002523572.11e-129(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.15e-30redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]