PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30078.m002253
Common NameLOC8283971, RCOM_1353410
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 320aa    MW: 34931.1 Da    PI: 8.112
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30078.m002253genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0013136158123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C+ C+++F++   L  H  +H
  30078.m002253 136 YQCKTCNRCFPSFQALGGHRASH 158
                    9***********99999998887 PP
2zf-C2H213.60.0002217239123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++Cg  Fs+   L  H+r+H
  30078.m002253 217 HECSICGAEFSSGQALGGHMRRH 239
                    78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139129.8E-11135160IPR007087Zinc finger, C2H2
SuperFamilySSF576678.53E-9135158No hitNo description
SMARTSM003550.08136158IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.536136163IPR007087Zinc finger, C2H2
PROSITE patternPS000280138158IPR007087Zinc finger, C2H2
SuperFamilySSF576678.53E-9212239No hitNo description
PfamPF139123.2E-13216241IPR007087Zinc finger, C2H2
SMARTSM003550.01217239IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743217239IPR007087Zinc finger, C2H2
PROSITE patternPS000280219239IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MMEQPLQELI MASPSSSHNT ELITQIIRGK RTKRPRPLSP LRLAVACSSE SGSGECGKIE  60
RLDDSNNNNN NINLSSSPSS SIEFAGGEEE DMANCLILLA RGTQPQTRKL SEPEAMATTR  120
AATTKGMMCS GPSYVYQCKT CNRCFPSFQA LGGHRASHKK PNNKGTGSNE EKKGREQEEE  180
DQLLLNDTNT TLSLQIANRG SSNPTAAAAN IKSNKVHECS ICGAEFSSGQ ALGGHMRRHR  240
AAFDTTSTRT ITPPPPPKTV SLVTSSPEFQ ETKKPRRNSL QLDLNLPAPE DHDNRESKFH  300
FASKEQVLVF SSSPLVDCHY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13236KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMap30078.m002253
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002519455.10.0zinc finger protein ZAT5
TrEMBLB9S0D60.0B9S0D6_RICCO; Nucleic acid binding protein, putative
STRINGXP_002519455.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.15e-48C2H2 family protein