PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29967.m000088
Common NameLOC8276082, RCOM_1147820
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 367aa    MW: 42469.4 Da    PI: 8.6988
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29967.m000088genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.13.5e-066586223
                   EETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                   +C  Cg  F+   +L++H+r+H
  29967.m000088 65 TCAECGANFKKAAYLRQHMRSH 86
                   6********************9 PP
2zf-C2H219.62.4e-0692116123
                    EEET..TTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                    y+C+  dC  s++rk++L+rH+  H
  29967.m000088  92 YVCSvdDCQASYRRKDHLNRHLLIH 116
                    99********************998 PP
3zf-C2H212.80.00035121146123
                    EEET..TTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                    +kCp  +C + F  + n krH +  H
  29967.m000088 121 FKCPieNCYREFVVQGNVKRHVKElH 146
                    89********************9988 PP
4zf-C2H216.72.1e-05160184123
                    EEET..TTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                    ++C+   Cgk+F+  s L++H  +H
  29967.m000088 160 HVCQesGCGKVFRYLSKLRKHEDSH 184
                    789999***************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.2242047IPR007087Zinc finger, C2H2
SMARTSM00355152042IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.4E-86485IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.8176491IPR007087Zinc finger, C2H2
SMARTSM003550.0616486IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SuperFamilySSF576677.39E-1273124No hitNo description
Gene3DG3DSA:3.30.160.606.2E-1486118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.26392121IPR007087Zinc finger, C2H2
SMARTSM003550.001192116IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094116IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.600.001119143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.637121151IPR007087Zinc finger, C2H2
SMARTSM003550.11121146IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280123146IPR007087Zinc finger, C2H2
SuperFamilySSF576675.59E-6155185No hitNo description
Gene3DG3DSA:3.30.160.601.7E-7156184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.138160189IPR007087Zinc finger, C2H2
SMARTSM003550.0087160184IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280162184IPR007087Zinc finger, C2H2
SMARTSM003556.6192217IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280194217IPR007087Zinc finger, C2H2
SMARTSM003558.6220241IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.5E-4231273IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.54E-8231292No hitNo description
PROSITE profilePS5015711.468251281IPR007087Zinc finger, C2H2
SMARTSM003550.021251276IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280253276IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-5280304IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035512282308IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280284308IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MEETAESEIP RPIFRDIRRY FCDYCGICRS KKSLITSHIQ THHKEEMNKD KSDEGVEADG  60
VKSNTCAECG ANFKKAAYLR QHMRSHSLER PYVCSVDDCQ ASYRRKDHLN RHLLIHKGKL  120
FKCPIENCYR EFVVQGNVKR HVKELHCESS PCAKIGEKQH VCQESGCGKV FRYLSKLRKH  180
EDSHVKLDAV EAICLESGCM KHFSNSQCLR AHIQSCHRYT TCEICGTKQL KKNLKRHLRT  240
HESGGSSVER IKCQFKDCCH TFSNKTNLNQ HVKAVHLEVK PFACGIPGCD KRFSFKHVRD  300
NHEKSGCHVY TPGDFEESDE QFRSRPRGGR KRKCPTVEML IRKRVTPPAD LDEYLTWFQS  360
MASEEQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A7e-162024118185Aart
2i13_B7e-162024118185Aart
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324332RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29967.m000088
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002533583.10.0transcription factor IIIA
SwissprotQ84MZ41e-143TF3A_ARATH; Transcription factor IIIA
TrEMBLB9T5R40.0B9T5R4_RICCO; Zinc finger protein, putative
STRINGXP_002533583.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-146transcription factor IIIA