PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29929.m004544 | ||||||||
Common Name | LOC8274251, RCOM_1077600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 237aa MW: 26715.2 Da PI: 8.003 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 50.3 | 3.1e-16 | 4 | 45 | 9 | 50 |
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 ++ + +R++++ KKAeELS+LCd+ va++ + ++gk+ +++ 29929.m004544 4 NKAVYKNRKATLKKKAEELSILCDVPVALVCYDPDGKVDTWP 45 566799***********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 11.297 | 1 | 48 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.4E-14 | 5 | 44 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.49E-15 | 5 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-5 | 10 | 25 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-5 | 25 | 46 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MSLNKAVYKN RKATLKKKAE ELSILCDVPV ALVCYDPDGK VDTWPEDKSK VDEILTEFAR 60 KQNLKLPSSE TTAKNKNGNQ DLQVMENGNI LDEEKKKKRK NAVKKVYKTW DERFDYLPEE 120 DLIEILEVIE SKEKSLAQRV KAEEVGKKRK GTQVDDDDDG LVTLRLGRYD YSASSSSSGN 180 LTKDKGKCSI ESSSNGSDFR HGIAKGIGDL GVQLEESRKV TEAVPITMPQ KTIQFYF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 94 | 99 | KKKKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29929.m004544 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002514809.1 | 1e-173 | agamous-like MADS-box protein AGL103 | ||||
TrEMBL | B9RM40 | 1e-171 | B9RM40_RICCO; Mads box protein, putative | ||||
STRING | XP_002514809.1 | 1e-172 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17113 | 4 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18650.1 | 2e-11 | AGAMOUS-like 103 |
Link Out ? help Back to Top | |
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Phytozome | 29929.m004544 |
Entrez Gene | 8274251 |