PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29883.m002031 | ||||||||
Common Name | LOC8274766, RCOM_0993110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | C2H2 | ||||||||
Protein Properties | Length: 188aa MW: 21120.8 Da PI: 5.688 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.0002 | 36 | 58 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H++ H 29883.m002031 36 YECVFCKRGFTTAQALGGHMNIH 58 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 4.5E-4 | 34 | 62 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.55E-6 | 34 | 62 | No hit | No description |
PROSITE profile | PS50157 | 10.99 | 36 | 63 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 38 | 58 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MESNPHLEDA NKSSSEEETD RSEKANDHDM GTGRSYECVF CKRGFTTAQA LGGHMNIHRK 60 DRAKPSLASS SSISSKVDED YYASLRGYTP IQSFPPHYYS TANHHHEVHT NYQTFFPPSS 120 GGSFRPPNGD GLYVQSPQIL NPFEDDWRRS LSLQIGPSHV DDDHNKQKEK DGSVADELDL 180 ELRLGHDP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29883.m002031 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002521018.1 | 1e-139 | probable transcriptional regulator RABBIT EARS | ||||
TrEMBL | B9S4W1 | 1e-138 | B9S4W1_RICCO; Nucleic acid binding protein, putative | ||||
STRING | XP_002521018.1 | 1e-139 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1686 | 30 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17810.1 | 2e-14 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | 29883.m002031 |
Entrez Gene | 8274766 |