PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29827.m002603

Common Name

LOC8280090, RCOM_0866520

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

Trihelix

Protein Properties

Length: 286aa MW: 33975.2 Da PI: 5.8516

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29827.m002603	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	80.5	2.3e-25	36	117	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W ++e+++Li +r e+e+++ +k++k+lWe vs kmrerg++r+p qCk+kw+nl +ryk ++++ ++ +cp+f++l+ 29827.m002603 36 QWGEEETKELIGIRGELEKDFTVAKRNKALWEIVSVKMRERGYHRTPPQCKCKWKNLINRYKGKETSDPDN----GLHCPFFEELH 117 7************************************************************99999984....457****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.329	29	93	IPR017877	Myb-like domain
Pfam	PF13837	5.1E-23	35	118	No hit	No description
CDD	cd12203	4.57E-23	36	100	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MFSSGDNNSL FRTIKVMAEV SGSVSPASSS SQVQVQWGEE ETKELIGIRG ELEKDFTVAK 60 RNKALWEIVS VKMRERGYHR TPPQCKCKWK NLINRYKGKE TSDPDNGLHC PFFEELHAVF 120 TERAKDMQRL LLESEAGSTQ GKKRFKRSFD EFSEDEDEDE DGSGEERPAK INLRKRKGER 180 IVPEMSSNAD IGGIQEMLKE FLQQQQQMEM QWREMMERRV HEQRRFEEEW RQAMEKIERE 240 RLMVEQAWRE REEQRRVREE NRAERRDALL TTLLDKLIHE NDMQGR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	5e-13	37	107	7	77	DNA binding protein GT-1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29827.m002603

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002519887.1	0.0	trihelix transcription factor GT-3b
TrEMBL	B9S1M2	0.0	B9S1M2_RICCO; Transcription factor, putative
STRING	XP_002519887.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1781	33	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	2e-29	Trihelix family protein

Link Out ? help Back to Top
Phytozome	29827.m002603
Entrez Gene	8280090