PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29805.m001494 | ||||||||
Common Name | LOC8283831, RCOM_0819800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | AP2 | ||||||||
Protein Properties | Length: 467aa MW: 51788.2 Da PI: 6.2788 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.7 | 5.1e-17 | 132 | 181 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g 29805.m001494 132 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 181 78*******************......55************************997 PP | |||||||
2 | AP2 | 44 | 5.6e-14 | 224 | 274 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g 29805.m001494 224 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDTEIEAARAYDKAAIKCNG 274 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.54E-16 | 132 | 191 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.0E-9 | 132 | 181 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.81E-11 | 133 | 191 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.6E-17 | 133 | 190 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.4E-32 | 133 | 195 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.556 | 133 | 189 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.51E-17 | 224 | 283 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.28E-26 | 224 | 284 | No hit | No description |
Pfam | PF00847 | 1.8E-9 | 224 | 274 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-16 | 225 | 282 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.725 | 225 | 282 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-32 | 225 | 288 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-6 | 226 | 237 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-6 | 264 | 284 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0032440 | Molecular Function | 2-alkenal reductase [NAD(P)] activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MLDLNLSFLS PGSTSPSPPG LDNNKLLEVS MASSGSLNSS SIVNAGDDDD DSNAVEPFSY 60 SFSILTNHPH HDDDDDDNSG DRTIQLFPVD GHSIKTQWLN LRSREVEYGA GGPPLAQRPV 120 KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR 180 GIEADINFNV SDYDEDIKQM SNFTKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR 240 MGQFLGKKYI YLGLFDTEIE AARAYDKAAI KCNGREAVTN FEPSTYEGEI MSEVNNADGN 300 QNLDLNLGIA PPDTSGTQKI NIETSGFPYQ SSWDGRPNDR GQMILSSGSA TLKDELPYDP 360 SMPFEHPPLW GGLHSNFFPI YKERAMEKRM EVDSWPNWTW QAQGPCGGAN PLPFFSTAAS 420 SGFGSSTITA PSAAAGQLQF PNSAILHHHF SPSITNPSNV SHFYYKS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29805.m001494 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002525190.2 | 0.0 | LOW QUALITY PROTEIN: floral homeotic protein APETALA 2 | ||||
Swissprot | B8AMA9 | 1e-111 | AP22_ORYSI; APETALA2-like protein 2 | ||||
TrEMBL | B9SGS1 | 0.0 | B9SGS1_RICCO; Floral homeotic protein APETALA2, putative | ||||
STRING | XP_002525190.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10581 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-102 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | 29805.m001494 |
Entrez Gene | 8283831 |