PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29660.m000770
Common NameLOC8275100, RCOM_0577410
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C3H
Protein Properties Length: 311aa    MW: 35428.4 Da    PI: 6.1872
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29660.m000770genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH50.33.9e-16233258126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +ktelC+ +++tGtC+yGd+C+FaHg
  29660.m000770 233 FKTELCNKWQETGTCPYGDNCQFAHG 258
                    79***********************8 PP
2zf-CCCH20.58.7e-07271296126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    ykte Cr  +++  C+yG rC+F H+
  29660.m000770 271 YKTEVCRMVLAGDACPYGHRCHFRHV 296
                    9**********55**********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.7E-20227265IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-12229264IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.018232260IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-10232259IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-13233258IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-8266300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-11266295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.169270298IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-5270297IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MQNDVASSAA NDDHTVISKS RDYLDFTSVF RPKASLSCTP YMDSRYVMQH QDLINRNALC  60
LTRLREAATE VESLRLENAA LRSFNRELNN HLNLVFQTSS SLQEHYHPLS STTAPFQILN  120
NGFNHFCNIG YGNAGEEEEE EEVCEEEDES PTSVMQVQNV DTTTPSERIT LPKSISVRSD  180
GYLKTSQPTA SKTRGTTRSK PQSQLDGAHK VYVRGGQKEE EPLEVEVYNQ GMFKTELCNK  240
WQETGTCPYG DNCQFAHGIE ELRPVIRHPR YKTEVCRMVL AGDACPYGHR CHFRHVLTDH  300
ERYIAQSKLQ R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-21233295466Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29660.m000770
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002526299.10.0zinc finger CCCH domain-containing protein 15
RefseqXP_015579114.10.0zinc finger CCCH domain-containing protein 15
SwissprotQ9C9F52e-84C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLB9SJY00.0B9SJY0_RICCO; Zinc finger protein, putative
STRINGXP_002526299.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-82C3H family protein