PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29333.m001039
Common NameLOC8259820, RCOM_0418780
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family TALE
Protein Properties Length: 679aa    MW: 73557.4 Da    PI: 7.3674
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29333.m001039genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.5e-093764131954
                    HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  29333.m001039 376 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 413
                    554459******************************88 PP
2BELL117.18.8e-38239311172
           BELL   1 erqelqk.kkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                    erqe+q+  kakL+s+l+eV++rY+qy++q+q+vissFe++ag+gsak Yt+lAl++iS++FrcLkdai++qi
  29333.m001039 239 ERQEIQMxXKAKLISMLDEVEQRYRQYHHQMQIVISSFEQAAGIGSAKTYTALALQTISKQFRCLKDAITGQI 311
                    6889987359**************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.8E-62158309IPR006563POX domain
PfamPF075262.3E-48163308IPR006563POX domain
PROSITE profilePS5007112.195354417IPR001356Homeobox domain
CDDcd000866.86E-12357418No hitNo description
SMARTSM003895.3E-9357421IPR001356Homeobox domain
SuperFamilySSF466898.55E-17358423IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.8E-29360423IPR009057Homeodomain-like
PfamPF059202.8E-18374413IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MATYFHGNPE IQAAAAEGLQ TLVLMNPTYV QYSDTPPPQP SSNLVFLNSA ASNLTPPPHF  60
SHAPPSTQQF VGIPLDPNSH DTSTLHGLVP RIHYNLYNPI DPASAAREIP RAQQGLSLSL  120
SSQQQPGYGS QAQAVSGEDM RVSGGSVSSG SGVTNGVSGI QGVLLSSKYL KAAQELLDEV  180
VNVNNNGLKS ELSKKGNNGI ISNNSNKALG ESSAGEGSAG GGGDSGAGGK RGAELSTAER  240
QEIQMXXKAK LISMLDEVEQ RYRQYHHQMQ IVISSFEQAA GIGSAKTYTA LALQTISKQF  300
RCLKDAITGQ IKAANKSLGE EDCLGGKLEG SRLKFVDHHL RQQRALQQLG MIQHNAWRPQ  360
RGLPERSVSV LRAWLFEHFL HPYPKDSDKH MLAKQTGLTR SQVSNWFINA RVRLWKPMVE  420
EMYLEEIKEQ ERNGSDDKTS KSEQNENAAP KSVLQEKGSA VENQTKSFKS LDGSPNHNAP  480
SAVSVSTAST SPIGGNVRNQ SGFSLIGSSE LEGITQGSPK RHRSTEMIQS PTSVPSINMD  540
IKPGEMNNDQ ISMKFGSERQ NRDGYSFIGG QTNFIGGFGQ YPIGDLGRFD TEQFTPRFSG  600
NGVSLTLGLP HCENLSMSGT HESFLPSQNI QLGRRVEISE PNEFGGINTS TPHSSTAYES  660
INIQNRKRFA AQLLPDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-16363420158Homeobox protein Meis1
4xrs_B2e-16363420158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29333.m001039
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002524053.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ560.0BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLB9SDI40.0B9SDI4_RICCO; Bel1 homeotic protein, putative
STRINGXP_002524053.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-161BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]