PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27964.m000356
Common NameRCOM_0130980
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 288aa    MW: 32178.2 Da    PI: 5.721
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27964.m000356genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12109154454
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  27964.m000356 109 KHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINDL 154
                    799***********************6.....4****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.231105154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-18105167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.28E-13108158No hitNo description
Gene3DG3DSA:4.10.280.102.6E-16109165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-10109154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-15111160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MIRENWGLVQ QAKSLFGSDM MPNNPNPPIQ LLGMNISFAD MGIISGIQEG DTTHANEKPQ  60
ENDEKKESNN VDSEHSDSDF SLFAAASLEK KSPKKRGRKP ALGGDKALKH VEAERQRREK  120
LNHRFYALRA VVPNVSRMDK ASLLSDAVSY INDLKAKIDE LESQLHIDSS KTVKLEVADT  180
KDNQSTTTTS DDQAASRPIS SVSTTNGFPL EVEVKSLGND AMIRVQSENV NYPAARLMTA  240
LRELEFQVHR VTMSTVNELM LQDVVVRVPD GLRTEEDIKT VIFRRLEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-26102178179Transcription factor MYC2
5gnj_B5e-26102178179Transcription factor MYC2
5gnj_E5e-26102178179Transcription factor MYC2
5gnj_F5e-26102178179Transcription factor MYC2
5gnj_G5e-26102178179Transcription factor MYC2
5gnj_I5e-26102178179Transcription factor MYC2
5gnj_M5e-26102178179Transcription factor MYC2
5gnj_N5e-26102178179Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap27964.m000356
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002529965.11e-166transcription factor MYC2
TrEMBLB9SVE90.0B9SVE9_RICCO; Transcription factor, putative
STRINGXP_002529968.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.16e-53bHLH family protein