PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 171130
Common NameSELMODRAFT_171130
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family C3H
Protein Properties Length: 484aa    MW: 53835.4 Da    PI: 6.1713
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
171130genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.7e-07139162226
              -S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
              k+ +Crff++   C+yG++C+ +Hg
   171130 139 KMQICRFFLQ-QRCRYGESCRSSHG 162
              8899******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.5E-5135162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-5137162IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-6137163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.028137164IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-5139163IPR000571Zinc finger, CCCH-type
SMARTSM004431.8E-11284330IPR000467G-patch domain
PfamPF015857.2E-12286327IPR000467G-patch domain
PROSITE profilePS5017413.074286332IPR000467G-patch domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MGVEEEEESA LLERELEEQL IEHNESLPAL EEALLREPGN QELQSLREDL VAAVKEVEES  60
LLSLKRRRLL LQIDSSKDLL ACDKDEEQQQ QHQREQHFVA GSKCRFRHTD GRWYNGRVLD  120
LCQDGTNARV SFLTPTNEKM QICRFFLQQR CRYGESCRSS HGFLVQLSSL KDLPDVRWQE  180
IEIGSTVLAC TSTDGTGLWR DAEVEKLVDQ LQVVNVVFSD DGSKAIVGKE NLALSEHAAV  240
TDSSSTSSSS SSDESSDDEE ILPGIGTFSG YQQTETVLFA NWEKHTRGVA SKLMAKMGYK  300
QGSGLGTSGQ GLVTPLQVRV LPPKTSLDFV SESTPPKPSA KKKSRGGKRK RDRKFAEERR  360
ASKALEEAEG APDVFSFINV QLSSSSGMDS SAKEKKPAVA ATGKSKDDRR SLVRQQDEIK  420
ELASKVAKLE EMARRNRKEK SVFEAVTRKL GEARKALGDA EAALQSTAHA VRSKEEEKKW  480
LRF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16468KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002970078.10.0zinc finger CCCH domain-containing protein 18
SwissprotQ6K6871e-143C3H18_ORYSJ; Zinc finger CCCH domain-containing protein 18
TrEMBLD8RFX60.0D8RFX6_SELML; Uncharacterized protein
STRINGEFJ292020.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP557055
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24830.14e-84C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]