PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 106147
Common NameMICPUN_106147
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family MYB_related
Protein Properties Length: 718aa    MW: 78235.5 Da    PI: 8.5317
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
106147genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.54.2e-10644692146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 
                      ++ +++eE + l ++v+++G+g+Wk I  + +   + Rt  ++k++w++
           106147 644 KQMFSQEEVDALREGVAKHGKGRWKDILLESQhvfQDRTTMDLKDKWRN 692
                      5779********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.064480552IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.1E-5483557IPR009057Homeodomain-like
SMARTSM007170.01484554IPR001005SANT/Myb domain
PROSITE profilePS5129412.962639698IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-11641698IPR009057Homeodomain-like
SuperFamilySSF466891.05E-13641695IPR009057Homeodomain-like
SMARTSM007173.3E-7643696IPR001005SANT/Myb domain
PfamPF002498.5E-8644692IPR001005SANT/Myb domain
CDDcd116602.41E-17645695No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MASETIILDD DYAMAATWAV EHVAALGVLD RAVLTDLFSI CDKTRNLPAR VEQRLVWVLL  60
NDVVEGDGVS PHVCKMMDKL SPLTAETSAE VAEICVRIRQ AVCIRSFDSP DGYLEFAAML  120
EELFPPKTGN ALLNAARKDM LHVLATSMDP GVVEEAREKY AVSDGKLRKD MRRFAELHGQ  180
KMGGTSINRL LDDIAAGRYN PPGPNRAHAA IPRIPAQQQQ QPRTGSLSPG SPASPRRKKS  240
MLRTPSGAPK VRSPAKSPPK KKPALPAHLA FEDPSDPHGE MDAYAFDEPD AAWNALGDLA  300
ENAAALEEAE AGPRPGKVKP GKKRGRSEED EGDEGAKKRI VERGGRPAGT PVLRTINALT  360
TRLLGGGEDD ETDEGIMPTQ AAPTEEDLAA ERKSRRRSLP GRVLGAARAA LTWRKGKGGV  420
GDTYPAPSPA AADFAGLDLA CVPSPPRAGD DDRPPPSGIA RRHSKLRDGG TDAEGYEDKR  480
KAGRRKLWSK EEVVALCRGY EQLEREGKLH VVNKLRPNGG VDWTTIYKMS EEIFAANERT  540
TMDLKDKMRN LLKKKEKVEA EKNRRESLDA AGATKAGSTK RKSGGFLSRI FGGNKADDDD  600
ESVKDLVALE DLVATAPELL PGVSNRHSLK NKKLGLAPIG RKSKQMFSQE EVDALREGVA  660
KHGKGRWKDI LLESQHVFQD RTTMDLKDKW RNIERMAQKE RAREEAAAEE SEGGDSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1560566EKNRRES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0015760.0CP001576.1 Micromonas sp. RCC299 chromosome 10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002508484.10.0predicted protein
TrEMBLC1FH080.0C1FH08_MICCC; Uncharacterized protein
STRINGXP_002508484.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1503622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.24e-11MYB_related family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]