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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
- The flowchart for construction of PlantTFDB
- Data source
- Data source (TFext)
- Pipeline to construct comprehensive protein dataset
- Family assignment rules
- List of studies which use the Family assignment rules
- Thresholds for domain identification
- Summary of TFs in different taxonomic lineages of green plants and the origination stage of TF families
- Pipeline for parsing BLAST reciprocal best hits (RBHs) and inferring orthologous groups
- Pipeline for GO annotation
- Curation and projection of TF binding motifs
- Transcription factor information
- Multiple sequence alignment
- Phylogenetic trees
- Quick search
- TF prediction server
- Help for PlantRegMap
Summary of TFs in different taxonomic lineages of green plants and the origination stage of TF families
Summary of TFs identified from 156 species with genome sequences. (A) Average number of TFs in different taxonomic lineages. (B) The origination stage of TF families. The number in parentheses, e.g., Eudicots (95), is the number of species used in the taxonomic lineage during dating the origination stage of TF families (See the manuscript for more details).
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