![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PNH11103.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 897aa MW: 92515.1 Da PI: 7.2684 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.2 | 3e-11 | 615 | 665 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 s+y+GV++++++grW+A++++ s + ++++lg + + Aa+a + ++k + PNH11103.1 615 SCYRGVTRHRRSGRWEAHLWVKS---IGRQVYLGGYEEEAHAAEAFDVVALKCK 665 79*******************43...34******88887788888877777765 PP | |||||||
2 | AP2 | 33.4 | 1.1e-10 | 711 | 759 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GV+ ++ +grW+++I p g +k+++lg fg + +Aa+a+++ +l+g PNH11103.1 711 AFRGVTAHP-SGRWESRIGIP---G-SKHIYLGLFGQERQAAAAYDRSLVRLRG 759 58*******.7*********8...3.6**********99********9999998 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 897 aa Download sequence |
CHLDHSLIDE VATTGAGGGG GGGCPLLANN PFDPAADAAC ASGSPLPSGA HPYPYAHHLQ 60 PPPTASLDHQ PDPTVDRLLS MGSADLCLLD RLFVPEGLDQ ALATTSAPGA GLAGSPGLNE 120 SRLQKQAQQA QTNKTAISTS TSSTPSTNNL YTIRPILILL IISSSKSSMA TPTSPTSNTL 180 TWTITTRHPP TLSACGHRRP SPLTPPAAMD HQGSPGYNGT PAEHQQHQHQ HHQQQHHQQQ 240 QQQEQPAYAT RHSTAGAGPS AALPHDGGGH AAAPWYGAAA EPQQHMPPQQ QQQLEMRQHQ 300 QRLPPQQQPG RQAHALIPQQ IELHGQLSPR PQHPYGNHDF QQAQAQALRL PQPASEPIVR 360 TQLPAAPPAD YGRQRQTSAM SVISDGGVVL LDLLAYGGDA GGTADMPCAR GGGGGLYGGG 420 GVDTEVHGAT MALTVNWDDD GGGSINGSHA RMPAATAAAA ASFGGSGDGR LFSSGGGGGG 480 MGDGGMPGPG LALPARAPRR RHLRVHTRTG LNGVREDGGK TSLPNGRSAQ GFRDDALAAA 540 DVGATAIGGG AAAIQAATAR TRAPKRNATF MALAPFSGSG GGEADASVEA PTGTVAVEEG 600 AAAAKEHDGA AQRSSCYRGV TRHRRSGRWE AHLWVKSIGR QVYLGGYEEE AHAAEAFDVV 660 ALKCKGPRAV RTNFPLPRYL GLLAALEAVS LDELIMAVRR QSQGFSRGSS AFRGVTAHPS 720 GRWESRIGIP GSKHIYLGLF GQERQAAAAY DRSLVRLRGA AAATNFPMGE YRRELAEYHA 780 VQQASTARGL LLLDAHMLPL TRPGPELEKW VKAGFRAFPH LAAEAAATDP EADMLEASAA 840 VKAAVGPAAD IGAGASIDTC SLSPMEAVLA IAAAAAAAAA ATMAASAEVA AAGDAAV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G20840.1 | 3e-32 | AP2 family protein |