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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PNH06180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena
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Family | AP2 | ||||||||
Protein Properties | Length: 874aa MW: 84358.9 Da PI: 4.4594 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 27.6 | 7.2e-09 | 5 | 54 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt.aeeAakaaiaarkkleg 55 s+++GV+w+ k+++W ++I + k ++g+ +e+Aa++++ ++ k +g PNH06180.1 5 SQFRGVSWHIKSQKWQCYITV------GKERRIGTNHErEEDAARQRDSMAYKAFG 54 789******************......46666666666579**********99877 PP | |||||||
2 | AP2 | 47.3 | 5e-15 | 96 | 145 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GV+wdk +g+W+A+I++ kr lg+f + +Aa a++aa++kl+g+ PNH06180.1 96 AYRGVSWDKASGKWRAQIQED-----GKRKGLGYFTEELQAALAYDAAARKLHGA 145 69***************9993.....3**********99**************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 874 aa Download sequence |
MSGSSQFRGV SWHIKSQKWQ CYITVGKERR IGTNHEREED AARQRDSMAY KAFGAAAQLN 60 FELSAEQRAE LDAMTFEELI ASFRVASERF SSGASAYRGV SWDKASGKWR AQIQEDGKRK 120 GLGYFTEELQ AALAYDAAAR KLHGAKAKLN FPHGGAGSAP AAAEGSPEPG PAAAAAGPTG 180 AAAAAAAPVR SAGGHKPPSA PRPRGKPATG SSPGAGPASA EAAAAASSDG TAAAAAARGP 240 VHAAAAAAAP PRASAAAAAA AAAAGPLAAA SAPTASCTSK RRPMRPVALG GGGAAPARAA 300 TAADAGATAG GSSALPPCSA AAGTAANAVT AATVPSSTAK SAAATTSGGC AKPSPAATAS 360 AVLAPGAANG ARSRDAATVA APRPATARGS LDLGQPRNGS PARGAPAALA AAPASDGTGG 420 TPPQDPLPPE RQAQALGPSA AHELDRPGIE GVGDGGAQRD EGVVGVDLSE QPQAGSGGEE 480 EVGPEEEAAD GGGEGGTGYD SGGGGGNSAY GSDGGSEYGG EDHFSDQGLL SGSSYYTDED 540 GDEMDFFYHP LQPLRGSGTR TNADGGGAAA VDDPPDAPAN GQPPTANSGC GGASPEALAP 600 ENDVHQPTPG RPGIFGAGDA ADAAQGAVTT AGQEGAAVEA CEAVAVVQET TAVDAAGAAE 660 AARAGAADVE GAALSLLDAA EDAQAVADDA AATRTALEAT EEAEIAQMAA KRARHESLRE 720 WAALLVGPEE RLMLQDAMLD MYGEEDMQEL VGLEDLITAA AAAVGPEVTA AVTEAAGYGA 780 SGSGSGSGDA SGSGDGGGGS SLSGAFGVAG SGGGVVSAAV LAAAAGAAGG TGAALPPPPV 840 PEPRGRVDAV VASYLRLARD GKRLVARATG GLLV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 6e-13 | AP2 family protein |