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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | POO00015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
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Family | AP2 | ||||||||
Protein Properties | Length: 426aa MW: 48302.8 Da PI: 9.0748 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.4 | 3e-12 | 86 | 142 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n +r k + g ++ +e Aa+a++ a++k++g POO00015.1 86 SRFRGVSRHRWTGRYEAHLWDkGSWNPtQRkKGKQ-GAYDEEESAARAYDLAALKYWG 142 789******************88887786625555.********************98 PP | |||||||
2 | AP2 | 50.6 | 4.9e-16 | 185 | 236 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g POO00015.1 185 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAAHAYDIAAIEYRG 236 89****99**********99966...3.6*************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence |
MNQLSLAVSH KENKRPDMEM TVKSELCPGK RHVCLFEGDN NATPAKCVKR RRRDSTAVLL 60 SCKDQQGEDQ SATTTTTTTT TVKRSSRFRG VSRHRWTGRY EAHLWDKGSW NPTQRKKGKQ 120 GAYDEEESAA RAYDLAALKY WGPSTFTNFP VSEYEKEIEI MKNVTKEEYL ASLRRRSSGF 180 SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYSTQ EEAAHAYDIA AIEYRGINAV 240 TNFDLSTYIR WLRPVSSSLG TQEPKPLTTA TTTTTRNSQP LTTFSYLIPG NERRDTSSFF 300 HPNPFAVDDL EASKRQDILQ QQQLQTPISP CSNSNSPSAL GLLFKSSVFR DLVEKNLCTE 360 NEEREENGVK NLAQMKNDNF DMISFDGIGN MNYPGLESHE ESTLSFCNGR GGQSFWNVPL 420 NLSSFN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 112 | 120 | PTQRKKGKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 2e-76 | AP2 family protein |