PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH82176.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 723aa MW: 83245.3 Da PI: 7.6113

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH82176.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.9	6.3e-27	89	191	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 +fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k+ +e++ +r+ ++t+Cka+++vk++ dgkw+++++++eHnH MCH82176.1 89 SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSfnrprarqnkqeSENSTGRRSCSKTDCKASMHVKRRPDGKWVIHSFVKEHNH 187 5*****************************************999999876554555558999**************************** PP FAR1 88 elap 91 el p MCH82176.1 188 ELLP 191 *975 PP

Sequence ? help Back to Top
Protein Sequence Length: 723 aa Download sequence
MDIDLRLPSG EHDKEEEETT TLDNMLEGEE KLHNGGIDGR HMVDAGIEVH ALNGGDLNSP 60 TVDMVMFKED TNLEPLSGME FESHGEAYSF YQEYARSMGF NTAIQNSRRS KTSREFIDAK 120 FACSRYGTKR EYDKSFNRPR ARQNKQESEN STGRRSCSKT DCKASMHVKR RPDGKWVIHS 180 FVKEHNHELL PAQAVSEQTR RMYAVMARQF AEYKTVVGIK NEKNPFDKGR NLGLEFVEAK 240 LMLDFFIQMQ SMNSNFFYAV DLGEDQRLKN LLWIDAKSRH DYINFCDVVS FDTTYVRNKY 300 KMPLVLFVGV NQHYQFILLG CALISDESAA TFSWLLQTWL KGVGGQVPKV IITDHDMTLK 360 SVISDVFASA CHCVCLWHIL GKVSENLAHV IKKHANFMTK FEKCVFRSLT SDDFDNRWEK 420 ILDRFELRQD ECMQSLYEDR KLWAPTFMKD VFLGGMSTPQ RSESVNSFFD KYVHRKTYIQ 480 DFVKQYETIL QDRYEEEAKA DSDTWNKVAT LKTPSPLEKS VAGIFTHTVF KKIQAEIIGA 540 VACHPKLDRQ DETIVVHRVH DMETRKDFFV VVNEVNSELS CICRQFEYKG YLCRHALVVL 600 QYSGHSVFPS QYVLKRWTKD AKIRNVTGEE SEHMLARVQR YNDLCHRSLK LSEEGSLSQD 660 SYGIAFHALN EAHKNCVSVN NSSKSPTEAG TSGVHGQLSI EEDTQSRNMG KSNKKKNPTK 720 KKK

Sequence ? help Back to Top

Protein Sequence Length: 723 aa Download sequence

MDIDLRLPSG EHDKEEEETT TLDNMLEGEE KLHNGGIDGR HMVDAGIEVH ALNGGDLNSP  60
TVDMVMFKED TNLEPLSGME FESHGEAYSF YQEYARSMGF NTAIQNSRRS KTSREFIDAK  120
FACSRYGTKR EYDKSFNRPR ARQNKQESEN STGRRSCSKT DCKASMHVKR RPDGKWVIHS  180
FVKEHNHELL PAQAVSEQTR RMYAVMARQF AEYKTVVGIK NEKNPFDKGR NLGLEFVEAK  240
LMLDFFIQMQ SMNSNFFYAV DLGEDQRLKN LLWIDAKSRH DYINFCDVVS FDTTYVRNKY  300
KMPLVLFVGV NQHYQFILLG CALISDESAA TFSWLLQTWL KGVGGQVPKV IITDHDMTLK  360
SVISDVFASA CHCVCLWHIL GKVSENLAHV IKKHANFMTK FEKCVFRSLT SDDFDNRWEK  420
ILDRFELRQD ECMQSLYEDR KLWAPTFMKD VFLGGMSTPQ RSESVNSFFD KYVHRKTYIQ  480
DFVKQYETIL QDRYEEEAKA DSDTWNKVAT LKTPSPLEKS VAGIFTHTVF KKIQAEIIGA  540
VACHPKLDRQ DETIVVHRVH DMETRKDFFV VVNEVNSELS CICRQFEYKG YLCRHALVVL  600
QYSGHSVFPS QYVLKRWTKD AKIRNVTGEE SEHMLARVQR YNDLCHRSLK LSEEGSLSQD  660
SYGIAFHALN EAHKNCVSVN NSSKSPTEAG TSGVHGQLSI EEDTQSRNMG KSNKKKNPTK  720
KKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	0.0	FAR1 family protein