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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro07_G12023 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | AP2 | ||||||||
Protein Properties | Length: 503aa MW: 55058.7 Da PI: 9.212 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55 | 2e-17 | 198 | 247 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aaka+++a++k++g Ro07_G12023 198 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAAKAYDRAALKFRG 247 78*******************......55************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 503 aa Download sequence |
MEMKMIQANS KKGLFIPSTP KLGSATGFWV SNILRIKTES KVDTIMLDLN VDIITTATES 60 NYEEKARALE AEKLREDSGT SDSSVVNAEE DSYSNNTSPF IFDILKKDKH GLCNNNREDQ 120 IVPSPEFSTR SLFPETGDGG GGGGGEFGVG LASSNTTSRP QWLNLSFAES CGQTELKAVQ 180 QKQQQARKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG KQVYLGGFDT AHSAAKAYDR 240 AALKFRGVDA DINFVLSDYE EDMKQMRHLN KEEFVHVLRR QSNGASRGNS KFRGVAAAAA 300 AVVPKIGPFE VRMAQPIPGN KLIKCNGREA VTNFDPSIYE GEIVVEASTE GSGHNLDLSL 360 GISQPSIGQK RKAFEMANKE RPMVNGSASA AVGQQPLHAL AILSKHPALY SGIYPGFLQN 420 TEEMATDHHK RIQAVSSPRF SNWAWQINGN NNNVTPMPMF SIAASSGFSP SIATTPPSAN 480 NQRSPILQDN SASNVRLPFP TSL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.1 | 6e-61 | AP2 family protein |