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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro06_G28234 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | AP2 | ||||||||
Protein Properties | Length: 361aa MW: 40304.5 Da PI: 8.6306 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.4 | 3.2e-12 | 55 | 111 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n ++k+ + g ++ +e Aa a++ a++k++g Ro06_G28234 55 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEETAAHAYDLAALKYWG 111 57*******************99998898888888********************98 PP | |||||||
2 | AP2 | 51.2 | 3.1e-16 | 154 | 205 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Ro06_G28234 154 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 205 89****99**********99966...3.6*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence |
MAKISQKKQK NTTSSSSNNS SSTTSTATTT SSPPATKVKR TRKSVRRDSP PQRSSIYRGV 60 TRHRWTGRYE AHLWDKNCWN ESQNKKGRQG AYDDEETAAH AYDLAALKYW GQDTILNFPV 120 STYEEELKEM EGQSKEEYIG SLRRKSSGFS RGVSKYRGVA RHHHNGRWEA RIGRVFGNKY 180 LYLGTYATQE EAATAYDMAA IEYRGLNAVT NFDLSRYIKS LCPNNQNVPN NTQPKPNVDL 240 SSIQEPDSKL GLGFKPHHPS SSASESMVAL PRSGNGSSAS SALGLLLQSP KFKEMLERTS 300 VSIDCSSTLS SEPDLPRRSF PDDIQTYFDC QDLNSYAEGD DIIFGELNSF ASPVFHCELD 360 A |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 1e-104 | AP2 family protein |