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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro06_G22445 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | AP2 | ||||||||
Protein Properties | Length: 402aa MW: 44410.6 Da PI: 9.0988 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.9 | 2.5e-13 | 71 | 127 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ ++k+ g ++ +e Aa+a++ a++k++g Ro06_G22445 71 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 127 57*******************6666777775555599******************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence |
MASSSSDPGP KTESGSGSGG AEASEAAAAA AATTDQQLLY RGLKKAKKER GCTAKERISK 60 MPPCAAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQGAYDD EEAAARAYDL 120 AALKYWGPGT LINFPVTDYT RDLEEMQNVS REEYLASLRR KSSGFSRGMS KYRALSSRWE 180 PSFGRMGGSE YFNNIHYGTG DDPATESEFL GTFCIERKID LTSYIKWWGP TKSRQADSIM 240 KSSEEAKHGF AGDSGGELKT LEWETQHTEP YQMPRLGVCQ EGRKHKGPRV SAMSILSRSP 300 AYKSLQEKAS IKQEKNADND ENENKNAIHK MDYGKAVEKS TSHDGGNERL SAALGMSGGL 360 SLQRNAFPLT PFLSAPLLSY NMIDPLADPM LWTSLAPVLP EV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41710.1 | 1e-151 | AP2 family protein |