PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G19545

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

AP2

Protein Properties

Length: 592aa MW: 65578.1 Da PI: 6.2384

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G19545	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	36.3	1.4e-11	257	313	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + ++ ++ k + g ++ +e Aaka++ a++k++g Ro06_G19545 257 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEERAAKAYDLAALKYWG 313 78*****************433.44555535555.779999************98 PP
2	AP2	48	3e-15	356	407	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Ro06_G19545 356 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 407 78**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 592 aa Download sequence
MSNWLGFSLT PHLRIHEGFD GREEDHQEQD HGVVGFPPHM SVMPLRSDGS LCFAADPFRR 60 PNGSEDWRSY ENSMVGATSV TNPVNDDEEG PKLEDFLGSC YSNSPPGDET KVYCQNQEDS 120 KINVNEAPNF SNPNSEVEAN PTDPSHHQSL IQPYSHYYAN PQSGALVPCT NGMYKSWLGQ 180 TIVVPYADEK SPSDQDNGSN NFQSNLSLTM SPSLQNGGVV PISQMQIVES KKRPGGKSST 240 REPVTRKSID TFGQRTSQYR GVTRHRWTGR YEAHLWDNSC RKEGQTRKGR QGGYDKEERA 300 AKAYDLAALK YWGPTTHINF PISTYEKELE EMKTMTRQEF VANLRRKSSG FSRGASVYRG 360 VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGTSA VTNFDMSRYD 420 VKRICSSSTL ITSDLAKRPS PKDSAPAAAN DQEFNSCASS TSSQPLFAIT SSEEPCDENL 480 TEMVWNENPN SAANNVTLAA ASSSRNSSCP QSPKCCEFGS NSEFGHGVGD YSHAYFSSMQ 540 GAKYEDGNGG SDHSRLGNLG LVQQILLTVM EIASKKNKVQ WHLLNDEALI DI

Sequence ? help Back to Top

Protein Sequence Length: 592 aa Download sequence

MSNWLGFSLT PHLRIHEGFD GREEDHQEQD HGVVGFPPHM SVMPLRSDGS LCFAADPFRR  60
PNGSEDWRSY ENSMVGATSV TNPVNDDEEG PKLEDFLGSC YSNSPPGDET KVYCQNQEDS  120
KINVNEAPNF SNPNSEVEAN PTDPSHHQSL IQPYSHYYAN PQSGALVPCT NGMYKSWLGQ  180
TIVVPYADEK SPSDQDNGSN NFQSNLSLTM SPSLQNGGVV PISQMQIVES KKRPGGKSST  240
REPVTRKSID TFGQRTSQYR GVTRHRWTGR YEAHLWDNSC RKEGQTRKGR QGGYDKEERA  300
AKAYDLAALK YWGPTTHINF PISTYEKELE EMKTMTRQEF VANLRRKSSG FSRGASVYRG  360
VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGTSA VTNFDMSRYD  420
VKRICSSSTL ITSDLAKRPS PKDSAPAAAN DQEFNSCASS TSSQPLFAIT SSEEPCDENL  480
TEMVWNENPN SAANNVTLAA ASSSRNSSCP QSPKCCEFGS NSEFGHGVGD YSHAYFSSMQ  540
GAKYEDGNGG SDHSRLGNLG LVQQILLTVM EIASKKNKVQ WHLLNDEALI DI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	1e-117	AP2 family protein