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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro06_G11576 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | AP2 | ||||||||
Protein Properties | Length: 466aa MW: 51824.8 Da PI: 7.0698 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 25.5 | 3.2e-08 | 127 | 152 | 1 | 31 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrf 31 s+y+GV++++++grW+++I+d ng k++ Ro06_G11576 127 SQYRGVTFYRRTGRWESHIWD---NG--KQV 152 78*******************...33..333 PP | |||||||
2 | AP2 | 43.3 | 9.4e-14 | 227 | 277 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+++ eAa+a+++a+ k +g Ro06_G11576 227 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDKAAIKCHG 277 89********.7******...5...334336**********99***********9998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence |
MLDLNLGFLS SRARNSAPNE MESSVGSINS SNDDSSSTLN FLDQNDVAAP YDDAPDHYFD 60 GRTIQLFPPP AQSQPLRSST TKQWLGLSSG SATAPHRYCA PPPAEQRIAP LQDKVKKSRR 120 GPRSRSSQYR GVTFYRRTGR WESHIWDNGK QVGLTLRILQ LGENQEADYL ITIAYDRAAI 180 KFRGTEADIN FSVIDYDEDI KQMSHFTKEE FVHILRRQST GFARGSSKYR GVTLHKCGRW 240 EARMGQLLGK KYIYLGLFDS EIEAARAYDK AAIKCHGRDA VTNFDQSLYD GEIMSEANNA 300 DESLDLNLGI APPLASESPN DNINLRSFPF HLGCNDIPIH MRVRNENSVP ATMRAQLPHG 360 SMEASVEPPI MSSMNANFFP IHMERATEKS MDANSFPNWA WQMQGLNGGA TPVPLFSAAA 420 SSGFPSSTTP SSSAAAPPLH FPNTSFLQHH FSPSFTNNTP HFYCRS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 2e-87 | AP2 family protein |