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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro06_G09250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | AP2 | ||||||||
Protein Properties | Length: 700aa MW: 76830.6 Da PI: 6.6703 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 33.2 | 1.3e-10 | 272 | 328 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +++Aa+a++ a++k++g Ro06_G09250 272 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEDKAARAYDLAALKYWG 328 57*******************4444.2455535555.7799999*************98 PP | |||||||
2 | AP2 | 46.7 | 8e-15 | 371 | 422 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Ro06_G09250 371 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 422 57****************988532...5************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 700 aa Download sequence |
MNMNWLGFSL SPQEDDAPIS HQLADQETLA SRLGFNSNDQ IQGAGGEADW NMKGVDMNSS 60 DGNNYKRTSS SSDLSPMLMG SSTTTSTSCS IISQPNLENH HQQQQLPKLE NFLGRHSFAD 120 HDQSSTSHDY MFDMNNGPGA ISSNVMNTSN TNSNNIGLSM IKTWLRNQPP QPRDNNHQLE 180 QESKTTKESR NQPQSSLSLS MSTGSLHTVT TATAGGASAS AGAGETTSSS NNNRKQSPVL 240 TATTTDPQTQ TTGGAIEAVP RKAIDTFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ 300 TRKGRQGGYD KEDKAARAYD LAALKYWGTT TTTNFPISTY EKEIDEMKPM TRQEYVASLR 360 RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF 420 RGLNAVTNFD MSRYDVKSIL ESSALPITTG ASAKRLKDVQ QQPPPPADHH HQIMLSSVLD 480 HHGQMIRSSS STEHDIMGNI FHQDDDHLRQ QLQMGGTHNF FHDHDHQQRS GLMGLMDSSA 540 AAASMEHSSG SNSVIYSVGD HHGNNNGYGS NARGTGSGYI MPMAMSTVVA NHGQNQADGN 600 NINGFGDGDG DDQEVNIKAQ QLGYDHHQNV FLGSSNTTDP AYQHHASNRN LYYQLPVHDD 660 QHESSSEAVA TSSTTCNMNW VPTAVPTHLA HSTFTVWNDT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17430.1 | 1e-120 | AP2 family protein |