![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ro06_G08502 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 524aa MW: 58633.8 Da PI: 8.0254 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.4 | 5.4e-11 | 215 | 266 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+ +++W +++ gk ++++g+f+t+eeAa+a++ a + +g Ro06_G08502 215 STYRGVSKSGDSKKWQVRLGK----GKDmHSIYVGTFDTKEEAARAYDIATIRVRG 266 569*************88555....2347*******************99887776 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 524 aa Download sequence |
MLYVQMSMNS DSFRFHSSES MDCNINLQSD NPFQPPNSIE DAPNYYNFTT AHYPFPSPLP 60 FGGYEGFLTG ANNSTSGGSQ AASHNVLNKE TSASSGSGTK SAAIKHNKRS QRQCKSFGNR 120 SSMYRGVTKY ENGRCEAFVW DNTDPEEKAK TSGFEEEEHA ARAHDLAALK LWGESAQLNF 180 PLSHYENEME DMKAFSKKDY FLHIRRKTSF AKGISTYRGV SKSGDSKKWQ VRLGKGKDMH 240 SIYVGTFDTK EEAARAYDIA TIRVRGRKAI TNFDINNYDV QQILDSSKFP IEKGASKTLR 300 RSSVDDVLRK RRTRNIPLLK LNVDSSGNPS LNPSAPPSSQ PIIPTQTTTI DSNSHSQSPI 360 PFLQLPVPHG YQIPTFQANP SFNPPFKYGG GERIMEPTVQ FQPILPSENP DFPFQQYYSK 420 DSQHHLYQNH SSQLLQDTRN PNSQQTPNFV AGWSNLASNS YISRCTTSQV PDASLETMGT 480 NKRTNGDGSN EMNGNLGYPD YGLGNSEWDP STWLDMFLMS SHVL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G20840.1 | 2e-58 | AP2 family protein |