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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro05_G01909 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 205aa MW: 23180.1 Da PI: 10.4696 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.5 | 6.5e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien r+vtfskRrng+lKKA+ELS+LCda+va+i fs++gk+y ++s Ro05_G01909 9 KRIENPASRKVTFSKRRNGLLKKAFELSILCDAQVALIAFSPSGKVYQFAS 59 79***********************************************86 PP | |||||||
2 | K-box | 52.2 | 2.6e-18 | 87 | 161 | 11 | 85 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 +a++e +++e + L++ i+nL+ +++l G +L+ L ++eL+qLe+qL++++++i sk +++ e+ + l++k k Ro05_G01909 87 TATMEFWRNETEELRRSIQNLEMRLKNLAGAELSMLGMQELKQLERQLKTGIERIHSKMRRVISENHSSLKRKVK 161 67899*******************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence |
MGRGKVELKR IENPASRKVT FSKRRNGLLK KAFELSILCD AQVALIAFSP SGKVYQFASH 60 DINRTIAMYR REVGLPQSSI PACCTRTATM EFWRNETEEL RRSIQNLEMR LKNLAGAELS 120 MLGMQELKQL ERQLKTGIER IHSKMRRVIS ENHSSLKRKV KLDELDQYGD ASCMITLGAS 180 TAGFFVFVRI DIAAVMPTVG LEKAI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.1 | 6e-44 | MIKC_MADS family protein |