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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro04_G36356 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 157aa MW: 17893.5 Da PI: 7.3483 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.8 | 6.9e-24 | 23 | 70 | 1 | 48 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 k+ien rqvt+skRr g+lKKAeELSvLCd e aviifs tgkl e Ro04_G36356 23 KKIENLPARQVTYSKRRRGLLKKAEELSVLCDCEYAVIIFSATGKLCE 70 689*******************************************87 PP | |||||||
2 | K-box | 25.3 | 6.5e-10 | 97 | 153 | 14 | 70 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 + +lq++ +L ke+ re+R++ GedLe L++ eLq+Le+++ + +++ ++K+ Ro04_G36356 97 SLELQHDRIRLGKELADKSRELRQMNGEDLEGLNIDELQKLEEEIAGGQNRVLQTKT 153 44566777777788888889****************************999999887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence |
MVGGVFWEQL AMMKTTSKKI TIKKIENLPA RQVTYSKRRR GLLKKAEELS VLCDCEYAVI 60 IFSATGKLCE SSSSSTNDVI ARYQSHIENV ERLDQPSLEL QHDRIRLGKE LADKSRELRQ 120 MNGEDLEGLN IDELQKLEEE IAGGQNRVLQ TKTLQIQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 7e-48 | MIKC_MADS family protein |