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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro04_G27331 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | AP2 | ||||||||
Protein Properties | Length: 553aa MW: 59655 Da PI: 7.4961 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.6 | 4.6e-11 | 193 | 249 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +++Aa+a++ a++k++g Ro04_G27331 193 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 249 57*******************5444.2455535555.7799999*************98 PP | |||||||
2 | AP2 | 47.1 | 5.9e-15 | 292 | 343 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Ro04_G27331 292 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 343 57****************988532...5************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 553 aa Download sequence |
MDSNSPHHHH HHQNWLGFSL SNHFSSPPNN SHLSLFEAFT SSPDTVVNSA PSDHHHHQDA 60 HAGATATDLS IFSGVGPKLE DFLGGGCTST STAVATSTAD VITTASATPM SLAHFSSSTS 120 TDPLAVSENN EIYDSELKTI AASFLRGFST TAAAAAAATT LQQTKPQTQN HAVGSTETAT 180 PKKTVDTFGQ RTSIYRGVTR HRWTGRYEAH LWDNSCRREG QSRKGRQGGY DKEDKAARAY 240 DLAALKYWGP TTTTNFPVTN YEKELTEMKI MSRQEFVASL RRKSSGFSRG ASIYRGVTRH 300 HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGLNAVTNF DMSRYDVKSI 360 ANSNLPIGGM SGKSKNSSDQ SLSADSKSLD DRDLSSASSV TFASSSHHQP SNSSTLSFAI 420 PIKQDSSPDY WSNIFGYHPN NNPPSLSNAR NPNSVGVAPT YFHGNMDFSA TSSTAATTSA 480 SETNNGLFFS GGYNVHGQLQ QQSTSSGTNN SIPFSTPIAL NSNMGYDQSS SSGYGTWIGP 540 SLNLFQTPIF GME |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-139 | AP2 family protein |