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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro03_G05866 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 238aa MW: 27888.6 Da PI: 6.74 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 81.1 | 7.4e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +rien + rqvtf+kRr+g+lKK +ELSvLCd+++ ++ifsstgk++ y+s Ro03_G05866 9 SRIENRTTRQVTFAKRRAGLLKKTHELSVLCDVQIGLVIFSSTGKMFQYCS 59 59***********************************************96 PP | |||||||
2 | K-box | 48.7 | 3.2e-17 | 72 | 161 | 2 | 90 |
K-box 2 qkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 q +sg++ ++++ae l+ e+ k++ke+++L+ ++ ++ GedL+ +++L++Le++Le+s++++R++K e+l +++++l+ ke+q + Ro03_G05866 72 QYASGTRiPQHSDAEILNAEMIKIRKETHELELSLQRYTGEDLSCVRFEDLEELENRLEESVNRVRARKFEILQQEVQNLRLSIKEHQAA 161 5567777778899999*****************************************************************998888865 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence |
MGRGKIHISR IENRTTRQVT FAKRRAGLLK KTHELSVLCD VQIGLVIFSS TGKMFQYCSD 60 STSMEEIIRR YQYASGTRIP QHSDAEILNA EMIKIRKETH ELELSLQRYT GEDLSCVRFE 120 DLEELENRLE ESVNRVRARK FEILQQEVQN LRLSIKEHQA AVFAHQHHYQ QQMEMLPKSE 180 EHRNLMEQFP FCGEEQPLLQ LATTSMQPQF ATYHTSTSSL QPNQPYLHDF SLNTPIYE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 3e-46 | MIKC_MADS family protein |