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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro03_G05331 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 287aa MW: 32839 Da PI: 9.998 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.2 | 1.7e-31 | 27 | 77 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyeys+ Ro03_G05331 27 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYSN 77 79***********************************************95 PP | |||||||
2 | K-box | 97.6 | 1.8e-32 | 126 | 219 | 4 | 97 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 s++ s++ea+++++qqe++kL+++i Lq+++R ++ e+L+++s+k+L+ +e++Lek++++iRskKnell+++ie++qk+e +l+++n+ Lr+k Ro03_G05331 126 SNNGSVSEATTQYYQQEANKLRAQITALQNSNRGYMAEGLSNMSIKDLRGVESKLEKAISRIRSKKNELLFAEIEYMQKRELDLHNNNQLLRAK 219 444459**************************************************************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence |
MAYENKPNMS LDADVQRRLG RGKIEIKRIE NTTNRQVTFC KRRNGLLKKA YELSVLCDAE 60 VALIVFSNRG RLYEYSNNNR PTTQAVTPLL AQSNLLDTSL IARQLWTPGN VRETIERYKK 120 ACADSSNNGS VSEATTQYYQ QEANKLRAQI TALQNSNRGY MAEGLSNMSI KDLRGVESKL 180 EKAISRIRSK KNELLFAEIE YMQKRELDLH NNNQLLRAKG QIAENERQQQ SINAIAGAGH 240 GSYEIMQSSQ QFHEARNYFQ VNALQPNLQY SRHDQISLQL QYGSKIR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-101 | MIKC_MADS family protein |