PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G18519

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

AP2

Protein Properties

Length: 575aa MW: 64169.6 Da PI: 6.0794

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G18519	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	35.8	1.9e-11	279	327	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + + g ++ +++Aa+a++ a++k++g Ro01_G18519 279 SIYRGVTRHRWTGRYEAHLWD------NSCRREGGYDMEDKAARAYDLAALKYWG 327 57*****************......688889999***********98 PP
2	AP2	48.9	1.7e-15	372	421	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Ro01_G18519 372 YRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 421 9*************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 575 aa Download sequence
MHCATRTFSQ YFGQSRFIYC KVTKANEGVE DETPIFGLNL KADTQMAPAT NWLSFSLMSP 60 MEMLRSSESE SPFAQAYDTS AATVASPHYF LDNFYANGWT NPKSEVFYTD GEEDQTKQTH 120 SNSLASFIDP QTQNHQPVPK LEDFLGDSMV RYSDSQTETQ DSSLTQIYDQ GSTYFGDHHQ 180 HQDLKAITGF QAFSANSGSE VEDSASMARN QLACAEFAGH SVESIGNELG FSSCAATNTN 240 NALSLGVTNT QSSNREKAIV PVDTDSSKKI SDTFGQRTSI YRGVTRHRWT GRYEAHLWDN 300 SCRREGGYDM EDKAARAYDL AALKYWGPTA TTNFPVSTYS KELEDMKLVT KQEFIASLRR 360 KSSGFSRGAS MYRGVTRHHQ QGRWQARIGR VAGNKDLYLG TFATEEEAAE AYDIAAIKFR 420 GINAVTNFEM NRYDVEAIGK SSLPVGGSAK RLKISLESEE QKPSVTNHDQ LPQNSQCSSG 480 SNSNNINFAH SMPQPIQTIP CGIPYDHAAA LYHHNLLQQF QPYNYYGTTS DSSAGSHPNI 540 ATTPMTMAMM PQQQQQQQQQ PPEFFIWPQY QTHHS

Sequence ? help Back to Top

Protein Sequence Length: 575 aa Download sequence

MHCATRTFSQ YFGQSRFIYC KVTKANEGVE DETPIFGLNL KADTQMAPAT NWLSFSLMSP  60
MEMLRSSESE SPFAQAYDTS AATVASPHYF LDNFYANGWT NPKSEVFYTD GEEDQTKQTH  120
SNSLASFIDP QTQNHQPVPK LEDFLGDSMV RYSDSQTETQ DSSLTQIYDQ GSTYFGDHHQ  180
HQDLKAITGF QAFSANSGSE VEDSASMARN QLACAEFAGH SVESIGNELG FSSCAATNTN  240
NALSLGVTNT QSSNREKAIV PVDTDSSKKI SDTFGQRTSI YRGVTRHRWT GRYEAHLWDN  300
SCRREGGYDM EDKAARAYDL AALKYWGPTA TTNFPVSTYS KELEDMKLVT KQEFIASLRR  360
KSSGFSRGAS MYRGVTRHHQ QGRWQARIGR VAGNKDLYLG TFATEEEAAE AYDIAAIKFR  420
GINAVTNFEM NRYDVEAIGK SSLPVGGSAK RLKISLESEE QKPSVTNHDQ LPQNSQCSSG  480
SNSNNINFAH SMPQPIQTIP CGIPYDHAAA LYHHNLLQQF QPYNYYGTTS DSSAGSHPNI  540
ATTPMTMAMM PQQQQQQQQQ PPEFFIWPQY QTHHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10510.2	1e-174	AP2 family protein