PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G11210
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MIKC_MADS
Protein Properties Length: 207aa    MW: 23429.6 Da    PI: 6.5205
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G11210genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.31.5e-211262151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 k ie  s rqvtfskRr+g++ KA  LS  C+ae+avi+fs+t+k+ye+ss
  Ro01_G11210 12 KMIERLSSRQVTFSKRRKGLFNKAADLSLRCGAEIAVIVFSNTNKMYEFSS 62
                 5789999******************************************96 PP

2K-box325.2e-121161602872
        K-box  28 ienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnel 72 
                  i  L     +++G +L+ LslkeL++Le+q+ +++++i ++K e+
  Ro01_G11210 116 IAALNLDCSRMMGMKLDGLSLKELNELEEQIREGIESIEKRKIEV 160
                  5567767789********************************886 PP

Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    
MALAGPRRTE IKMIERLSSR QVTFSKRRKG LFNKAADLSL RCGAEIAVIV FSNTNKMYEF  60
SSTTMEHILS RYINHGGGGL SMESPENKPQ DEPAAKHEPS SCDTLSAIVL RQEPIIAALN  120
LDCSRMMGMK LDGLSLKELN ELEEQIREGI ESIEKRKIEV QDYYKYKPSY MLEYSNHLDR  180
NNSQLFYGTS SSAVSDCTES GQRLFEL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.11e-30MIKC_MADS family protein