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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro01_G11210 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 207aa MW: 23429.6 Da PI: 6.5205 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.3 | 1.5e-21 | 12 | 62 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ie s rqvtfskRr+g++ KA LS C+ae+avi+fs+t+k+ye+ss Ro01_G11210 12 KMIERLSSRQVTFSKRRKGLFNKAADLSLRCGAEIAVIVFSNTNKMYEFSS 62 5789999******************************************96 PP | |||||||
2 | K-box | 32 | 5.2e-12 | 116 | 160 | 28 | 72 |
K-box 28 ienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnel 72 i L +++G +L+ LslkeL++Le+q+ +++++i ++K e+ Ro01_G11210 116 IAALNLDCSRMMGMKLDGLSLKELNELEEQIREGIESIEKRKIEV 160 5567767789********************************886 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence |
MALAGPRRTE IKMIERLSSR QVTFSKRRKG LFNKAADLSL RCGAEIAVIV FSNTNKMYEF 60 SSTTMEHILS RYINHGGGGL SMESPENKPQ DEPAAKHEPS SCDTLSAIVL RQEPIIAALN 120 LDCSRMMGMK LDGLSLKELN ELEEQIREGI ESIEKRKIEV QDYYKYKPSY MLEYSNHLDR 180 NNSQLFYGTS SSAVSDCTES GQRLFEL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57390.1 | 1e-30 | MIKC_MADS family protein |