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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro01_G04130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | AP2 | ||||||||
Protein Properties | Length: 528aa MW: 58694.2 Da PI: 7.3861 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.3 | 6.8e-17 | 163 | 212 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Ro01_G04130 163 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 212 78*******************......55************************997 PP | |||||||
2 | AP2 | 41.9 | 2.5e-13 | 257 | 307 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ +Aa+a+++a+ k +g Ro01_G04130 257 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIDAARAYDKAAIKCNG 307 89********.7******5553..2.26**********99**********99776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 528 aa Download sequence |
MWDLNDSPDQ RRLDDESEGC SSQKTNSADG DDDKGKRVGS VSNSSSSAVV IEDGSDDEDT 60 NPNASGNRKR GSKIFGFSVM NGTDPEPVTR QFFPVDESCE MGPAPGGVAA EKAASSSSSF 120 PRAHWVGVKF CQSDSAAPGK PAEGLSQQQP MKKSRRGPRS RSSQYRGVTF YRRTGRWESH 180 IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF RGVEADINFN IEDYEEDLKQ EQMSNLTKEE 240 FVHVLRRQST GFPRGSSKYR GVTLHKCGRW EARMGQFLGK KYVYLGLFDT EIDAARAYDK 300 AAIKCNGKEA VTNFDPSIYE SELNPTEPSG NNAGDHNLDL SLGNPNQKKK NQAFGTAQNQ 360 AHQNAAMEPQ QQQSASMQFE ADWRSNQGFR PKPREDSDNR RRDGYLENET MQLLLRTNLQ 420 SPSPTQMHKY GQFNQFRNPA GETPAQVSHN FPPHTFNPPN YQIQFPSSSE VGGRIGSDLS 480 LSMSDRQQWQ SGHHPSDLFA TAAASSGFPP QNGWLQKNNG FHSLTRRT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.1 | 1e-127 | AP2 family protein |