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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro01_G01137 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 262aa MW: 30095.8 Da PI: 8.8654 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.9 | 1.1e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ien++nrqvt+skRrngi+KKA+EL vLCda+v++i+ sst+k++ey+s Ro01_G01137 9 KLIENQTNRQVTYSKRRNGIFKKAQELTVLCDAQVSLIMQSSTDKIHEYIS 59 569**********************************************86 PP | |||||||
2 | K-box | 80.9 | 3e-27 | 71 | 168 | 1 | 98 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 yqk+ + +l+++++e ++++l kLk+ +++L+r +R++lG dL+ L++ eL+ Le+++ +sl+ iR++K++++++q+++++k+ k+l+e+n +L + + Ro01_G01137 71 YQKNLQIDLWSSHYEAMKENLWKLKEVNNKLRRDIRQRLGHDLNGLTIVELRDLEEKMARSLEIIRDRKYHVIKTQTDTTKKRVKNLEERNSNLMHGY 168 78888899**************************************************************************************8765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence |
MGRGKIEIKL IENQTNRQVT YSKRRNGIFK KAQELTVLCD AQVSLIMQSS TDKIHEYISP 60 TTTTKKMLDL YQKNLQIDLW SSHYEAMKEN LWKLKEVNNK LRRDIRQRLG HDLNGLTIVE 120 LRDLEEKMAR SLEIIRDRKY HVIKTQTDTT KKRVKNLEER NSNLMHGYEA ALEDPQYGYV 180 DNEGDFESAV ALANGASNLY FFNNRVHNNH NHNHNLDHGH GGGSLVSSIT QLHNPDNHNL 240 DNGNGGGSLM SSITHLHDLR LA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 2e-72 | MIKC_MADS family protein |