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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_ssc0000308.1_g000004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 251aa MW: 28376.1 Da PI: 7.0501 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.4 | 8.1e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien+ rqvtfskRr+g+lKKA+EL +LCdaevavi+fs+tgkl+e+ss Rmu_ssc0000308.1_g000004.1 9 KKIENTNSRQVTFSKRRAGLLKKAQELAILCDAEVAVIVFSNTGKLFEFSS 59 68***********************************************96 PP | |||||||
2 | K-box | 71.7 | 2.2e-24 | 84 | 169 | 15 | 100 |
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + ++ Lk+e+e+Lq++q +llG+dL+sLslkeLq+Le+qL ++l ++++kK++ll+eq+e+++ ke+++ +en++Lrk+ Rmu_ssc0000308.1_g000004.1 84 RAEEDAVDVLKDELEKLQQNQLRLLGNDLSSLSLKELQKLENQLTEGLFSVKEKKEKLLMEQLEQSRVKEQRAIHENETLRKQ 166 455678999************************************************************************** PP K-box 98 lee 100 +ee Rmu_ssc0000308.1_g000004.1 167 VEE 169 987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence |
MGRGKIEIKK IENTNSRQVT FSKRRAGLLK KAQELAILCD AEVAVIVFSN TGKLFEFSSA 60 GMKRTIARYS KCYESSETAL VESRAEEDAV DVLKDELEKL QQNQLRLLGN DLSSLSLKEL 120 QKLENQLTEG LFSVKEKKEK LLMEQLEQSR VKEQRAIHEN ETLRKQVEEL RRLFPQADHA 180 VPSYLDYCPV EKQNSPVHHG AKSPDLVSNF ALDNGDSDTT LQLGLPSDTY RKRKAPERES 240 HSNDSGSQLG L |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13790.1 | 2e-72 | MIKC_MADS family protein |