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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_ssc0000116.1_g000053.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 198aa MW: 22737.9 Da PI: 8.2212 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.3 | 7.5e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ienk+nrqvtfskRr g++KKA+E+SvLCda+va+i+ s+gk+++++s Rmu_ssc0000116.1_g000053.1 9 KKIENKINRQVTFSKRRLGLFKKAQEISVLCDAQVALIVSCSRGKVFDFAS 59 68**********************************************986 PP | |||||||
2 | K-box | 64.6 | 3.5e-22 | 60 | 126 | 34 | 100 |
K-box 34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++ h+lGedLe+L lkeL++Le+qL++ l++ R++K++++l+q+e l++ke++l+e++k+L+++lee Rmu_ssc0000116.1_g000053.1 60 TNEHFLGEDLEKLRLKELENLEKQLDRTLSQARQRKMQMMLDQLEALRRKENDLEEIHKQLKSELEE 126 6689***********************************************************9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence |
MGRGKVELKK IENKINRQVT FSKRRLGLFK KAQEISVLCD AQVALIVSCS RGKVFDFAST 60 NEHFLGEDLE KLRLKELENL EKQLDRTLSQ ARQRKMQMML DQLEALRRKE NDLEEIHKQL 120 KSELEEREKH SDNDDDEALI QGRPGGEPTV AAGASHENIS TKTRSANANQ QEPTYEYGKD 180 LLYMNLKLLT LVNTVQKP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26310.1 | 4e-27 | MIKC_MADS family protein |