PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0010155.1_g000006.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MIKC_MADS

Protein Properties

Length: 168aa MW: 19382.2 Da PI: 9.9003

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0010155.1_g000006.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100.8	5.3e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s Rmu_sc0010155.1_g000006.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	69.3	1.2e-23	84	144	9	69
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 + ea + s+qqe+ kLk+++e Lqr+qR+llGedL++Ls keL++Le+qL+ slk+iRs++ Rmu_sc0010155.1_g000006.1 84 TREALELSSQQEYLKLKARYEALQRNQRNLLGEDLGPLSSKELESLERQLDLSLKQIRSTR 144 556666789*************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 SSMLKTLERY QKCNYGAPET NVSTREALEL SSQQEYLKLK ARYEALQRNQ RNLLGEDLGP 120 LSSKELESLE RQLDLSLKQI RSTRVLDLIS FTIYKLSHCF PHNSSTNT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.3	3e-91	MIKC_MADS family protein