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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0007883.1_g000004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 211aa MW: 23632.6 Da PI: 8.2025 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 78.9 | 3.7e-25 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ien rqvtf+kRr+g+lKKA+ELSvLCda++ v+i+ss+gkl+e Rmu_sc0007883.1_g000004.1 9 KKIENPVHRQVTFCKRRAGLLKKAKELSVLCDADIGVLIYSSHGKLFEL 57 68********************************************996 PP | |||||||
2 | K-box | 54.7 | 4.5e-19 | 84 | 175 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 + e+++ ++e++ Lk+eie Lq+ + + G + +++sl eLq Le++Le + ++Rs K+++ll++i+ l++ e l +nk Rmu_sc0007883.1_g000004.1 84 AMETQTLDAKKEINLLKQEIEILQKGLGYMFGGGAGTMSLDELQVLEKHLELWIYHVRSAKMDILLQEIQLLRNSEGILTAANK 167 5677888899************************************************************************** PP K-box 93 aLrkklee 100 +L+ k+ee Rmu_sc0007883.1_g000004.1 168 YLQDKIEE 175 *****997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence |
MARGKVQMKK IENPVHRQVT FCKRRAGLLK KAKELSVLCD ADIGVLIYSS HGKLFELATK 60 GTMQGLIERY MKMKPAREPQ AETAMETQTL DAKKEINLLK QEIEILQKGL GYMFGGGAGT 120 MSLDELQVLE KHLELWIYHV RSAKMDILLQ EIQLLRNSEG ILTAANKYLQ DKIEENSGVT 180 NLIPMASDSP YPLTIPNDDI ISILGSNFGL N |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 8e-82 | MIKC_MADS family protein |