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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0004650.1_g000002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 205aa MW: 23118.8 Da PI: 6.5217 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 59.9 | 3e-19 | 13 | 62 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ie s rqvtfskRr+g++ KAe C+ae+avi+fs+t ++ye+ss Rmu_sc0004650.1_g000002.1 13 KIEHLSSRQVTFSKRRKGLFNKAEDFALRCGAEIAVIVFSNTKRMYEFSS 62 79999*******************************************96 PP | |||||||
2 | K-box | 35.4 | 4.5e-13 | 100 | 154 | 18 | 72 |
K-box 18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnel 72 + L++ei+ L +l G +L+ +sl+eL++Le+++ ++++++ ++Kne+ Rmu_sc0004650.1_g000002.1 100 LSAIGLLQEEIRALNLDCSRLTGTELDGMSLRELNELEKKIREGIESVEKRKNEV 154 4567789********999***********************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence |
MAMSGPRRTK IEKIEHLSSR QVTFSKRRKG LFNKAEDFAL RCGAEIAVIV FSNTKRMYEF 60 SSTSMEHILL RYNKESAAGS SMESPENKSQ HEPSSSSDSL SAIGLLQEEI RALNLDCSRL 120 TGTELDGMSL RELNELEKKI REGIESVEKR KNEVQNYYQP SYMLEYSNRL DGNNSNFFSG 180 TSSSAVSGCT ESEQSKQFVD TCLHL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57390.1 | 1e-28 | MIKC_MADS family protein |