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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0004507.1_g000033.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 214aa MW: 24834.4 Da PI: 8.8271 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 56.3 | 4.1e-18 | 10 | 46 | 15 | 51 |
HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +R+++++KKA+ LSvLCdaeva+i f s+gkl+e+ss Rmu_sc0004507.1_g000033.1 10 RRQATLFKKAHQLSVLCDAEVAIIAFTSNGKLHEFSS 46 79*********************************96 PP | |||||||
2 | K-box | 27.9 | 9.8e-11 | 88 | 163 | 22 | 96 |
K-box 22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee.lqkkekelqeenkaLrk 96 Lk + L e+ +++G++L++Ls +eL Le+q +l ++ +kK+ell+e++++ + + e+++ +e+++L + Rmu_sc0004507.1_g000033.1 88 HELKGKHAALSLEISRRMGKELDDLSREELCALEEQQLWALLSVNDKKKELLVEMLQRsMSRDEQRAVQEKENLIR 163 679999999*********************************************9986255667777788887765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence |
MPTTENLGIR RQATLFKKAH QLSVLCDAEV AIIAFTSNGK LHEFSSTSME HTLSRYKGKV 60 EQSRPEESRR HEPAKLDEPK PCNNYILHEL KGKHAALSLE ISRRMGKELD DLSREELCAL 120 EEQQLWALLS VNDKKKELLV EMLQRSMSRD EQRAVQEKEN LIRGFEGRRR ERPYVLQDHG 180 LNRMVHGTKL KAVSLYNRPL QISDEHSDIL QLRL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57390.1 | 4e-23 | MIKC_MADS family protein |