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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0002748.1_g000019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 283aa MW: 31983.2 Da PI: 5.2265 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.8 | 7.8e-30 | 65 | 115 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss Rmu_sc0002748.1_g000019.1 65 KRIENAASRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGKLYEFSS 115 79***********************************************96 PP | |||||||
2 | K-box | 71.2 | 3.2e-24 | 136 | 230 | 5 | 98 |
K-box 5 sgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 sgk+ +++ ++e +++ + + k+ie +++++R+llG++Les+s++eLqq+e+qLe+sl kiR++Kn +l+eqie +++ ek+l Rmu_sc0002748.1_g000019.1 136 SGKAvQDHDHMELANEDTSSMAKRIEFIESSKRKLLGDGLESCSIEELQQIENQLERSLAKIRDRKNLMLREQIELMKEEEKSL 219 5666345556666778899***************************************************************** PP K-box 88 qeenkaLrkkl 98 ++n +Lr+k Rmu_sc0002748.1_g000019.1 220 LKQNVELREKC 230 ********985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence |
MFAVDEGKAP PCRPQEPPAT GVVSNFRHVS PPDTRVERDP CVPPLSTLGE SKSECLNMWG 60 KTQMKRIENA ASRQVTFSKR RNGLLKKAFE LSVLCDAEVA LIIFSTRGKL YEFSSCSSLN 120 NTIDRFQKRV KDQGLSGKAV QDHDHMELAN EDTSSMAKRI EFIESSKRKL LGDGLESCSI 180 EELQQIENQL ERSLAKIRDR KNLMLREQIE LMKEEEKSLL KQNVELREKC GMQPIGPPNN 240 RGGGGEEDEE DDVETESETE TMEVETELFI GPPKRQRSSK KIP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22950.1 | 5e-54 | MIKC_MADS family protein |