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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0001097.1_g000006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 474aa MW: 53735.7 Da PI: 8.2916 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.4 | 2.8e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s Rmu_sc0001097.1_g000006.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 96.1 | 5.4e-32 | 83 | 173 | 10 | 100 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 +++ es+++e+ kLk + e+Lqr+qR+llGedL++L+ keL+qLe+qLe+slk++Rs+K++ +l+q+++lq ke++l e+n++ Rmu_sc0001097.1_g000006.1 83 PAKELESSYREYLKLKTRCESLQRTQRNLLGEDLGPLNTKELEQLERQLESSLKHVRSTKTQSMLDQLSDLQSKEHMLIEANRD 166 5677999***************************************************************************** PP K-box 94 Lrkklee 100 L++kl+e Rmu_sc0001097.1_g000006.1 167 LTMKLDE 173 ****986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 474 aa Download sequence |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 SSILKTLERY QKCSYGAMEV NEPAKELESS YREYLKLKTR CESLQRTQRN LLGEDLGPLN 120 TKELEQLERQ LESSLKHVRS TKTQSMLDQL SDLQSKEHML IEANRDLTMK LDEINSGTQL 180 RQTWERGHAH QTMLYGTQHA QTQGLMFQPL DCNPTLQIGY NAVGSQQMTA ATPAPTQPVN 240 GFIPATGLAQ REVTLVEDLI VETGVWDEGK ILRLFSLEEA EAIINIPLSR RVLDSRRVQL 300 ESLICVLCET NQESTLHLCK DCAFTQRVLQ SNMVLRQVCY GPQHEGRDLL QWLAACAAEL 360 SPTSFGDFLF LLYGIWKERN DRVWDQKKGD ASDVVIRTMS RLQEYRFHTL HNGEGKIRRS 420 RMVRWVAPPV GFLKINVDGA FDHVTRKGGA GFVIRNELGV MLAGGACPLT GLLS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15800.1 | 1e-105 | MIKC_MADS family protein |