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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0000256.1_g000010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 227aa MW: 26429.9 Da PI: 7.7395 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 81.2 | 6.8e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +rien + rqvtf+kRr+g+lKK +ELSvLCd+++ ++ifsstgk++ y+s Rmu_sc0000256.1_g000010.1 9 SRIENRTTRQVTFAKRRAGLLKKTHELSVLCDVQIGLVIFSSTGKMFQYCS 59 59***********************************************96 PP | |||||||
2 | K-box | 51.2 | 5.4e-18 | 72 | 174 | 2 | 97 |
K-box 2 qkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne.....llleqiee 79 q +sg++ +++++ l+ e++k++ke++ L ++ ++ GedL+s +++L++Le++Le+s++++R++K + ++ q ++ Rmu_sc0000256.1_g000010.1 72 QYASGTRiPQHSDTDFLNAEIRKIRKETQDLHLSLQRYTGEDLSSVRFEDLEELENRLEESVNRVRARKIKehqaaVFAHQHHY 155 556777777889999****************************************************99653334377888888 PP K-box 80 lqkkekelq.eenkaLrkk 97 +q++e e + ee+++L ++ Rmu_sc0000256.1_g000010.1 156 QQQMEMEPKsEEHRQLMEQ 174 8888877541667777766 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence |
MGRGKIHISR IENRTTRQVT FAKRRAGLLK KTHELSVLCD VQIGLVIFSS TGKMFQYCSD 60 STSMEEIIRR YQYASGTRIP QHSDTDFLNA EIRKIRKETQ DLHLSLQRYT GEDLSSVRFE 120 DLEELENRLE ESVNRVRARK IKEHQAAVFA HQHHYQQQME MEPKSEEHRQ LMEQFPFCGE 180 EQPLLQLATT SMQPQFAYQA STSSLPPNPP QLHDFSLNTP IYGIHKP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.3 | 1e-41 | MIKC_MADS family protein |