PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0235501

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 588aa MW: 62596.1 Da PI: 9.1499

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0235501	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.6	9e-11	210	254	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHH..HHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktI..artmgkgRtlkqcksrw 44 r++WT+eEd+ lv av+ +G g+W+ I a+ g Rt++q+ rw RcHm_v2.0_Chr7g0235501 210 RKKWTEEEDLELVSAVNIYGEGNWTQIvkANFKG-DRTANQLSQRW 254 789**********************4444455.*****9999 PP

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence
MIETMGENPK EEKKGFITEE DTATLLQRYT ATTILALLQE VAHLLLSEKI DWDKLVANTT 60 TGITNAREYQ MLWRHLAYRE PLPDKFDDGA RPQDVDSDYE YEVEVAPPVS GEASTEAAAC 120 VKVLMASGLP SDSSHLNGTT VEAPLTINIP NGQSSKTYEP SASAKGMNIT VPVSIQKQTL 180 PAMTTTAAAK AEGDDAYRST SNIMAPRKKR KKWTEEEDLE LVSAVNIYGE GNWTQIVKAN 240 FKGDRTANQL SQRWGIVKKR QKKLGVGEGG TPCIKKEALL AAHQAITHFL DNGPNRASIT 300 VGTVGTNANG TSAETNANSR SGVTNGICNS GLHTTTAEGL NAKKPNRIGS FGSTPKGRVT 360 SKKTLPKSNM NPDIIRATAV AAGARIVTQS DAELLKAAAQ AKNTIHIMPQ TGGSIKSLTP 420 GGLSIKSEPH PTVHHIRTGP ATTLPSTHPP TRHPGSLKVV SQTSQQALKI DTSRKITGVN 480 SSPGAEVLRK QVQNEVLPGS GQVQEGKVEL PKQKAESESL LTNAQNLAGS LHTKKDGSND 540 KAVTGEERRG SIGGGDDPSA VNGEDQNTTL KRTTDVSDHD LKQGGGSH

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence

MIETMGENPK EEKKGFITEE DTATLLQRYT ATTILALLQE VAHLLLSEKI DWDKLVANTT  60
TGITNAREYQ MLWRHLAYRE PLPDKFDDGA RPQDVDSDYE YEVEVAPPVS GEASTEAAAC  120
VKVLMASGLP SDSSHLNGTT VEAPLTINIP NGQSSKTYEP SASAKGMNIT VPVSIQKQTL  180
PAMTTTAAAK AEGDDAYRST SNIMAPRKKR KKWTEEEDLE LVSAVNIYGE GNWTQIVKAN  240
FKGDRTANQL SQRWGIVKKR QKKLGVGEGG TPCIKKEALL AAHQAITHFL DNGPNRASIT  300
VGTVGTNANG TSAETNANSR SGVTNGICNS GLHTTTAEGL NAKKPNRIGS FGSTPKGRVT  360
SKKTLPKSNM NPDIIRATAV AAGARIVTQS DAELLKAAAQ AKNTIHIMPQ TGGSIKSLTP  420
GGLSIKSEPH PTVHHIRTGP ATTLPSTHPP TRHPGSLKVV SQTSQQALKI DTSRKITGVN  480
SSPGAEVLRK QVQNEVLPGS GQVQEGKVEL PKQKAESESL LTNAQNLAGS LHTKKDGSND  540
KAVTGEERRG SIGGGDDPSA VNGEDQNTTL KRTTDVSDHD LKQGGGSH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	208	212	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	7e-71	MYB_related family protein