PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0233161

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 355aa MW: 40313.2 Da PI: 4.4331

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0233161	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.7	7.8e-12	188	231	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L RcHm_v2.0_Chr7g0233161 188 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 231 589*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MELNEHSFLE ELLALRRDSS WETIPPEMNE FLSSSTWSSF DYFDNQNPPP FFPQSSSGQE 60 FSPPFEPNLN NYHNNTTFNE VYYPLGFGTD ELLSAPQVTT DSSYNTLGDT PPFPVQEDNN 120 PWSMLEEEEL SLLGDEIHDL ETQAAACKVE PTQSSSSPEA APVFNMGMCV ERNSRTSKKL 180 QGQPSKNLMA ERRRRKRLND RLSMLRSIVP KISKMDRTSI LGDTIDYMKE LLDRINNLQH 240 EIEESGSDQL NVMRLFKDMK PNELLVRNSP KFDVQRRNVD TRIEICCAGK PGLLLSTVTT 300 LETLGLEIQQ CVISCFNDFA MQASCSEGLD QRTLVTSEDM KQALFRNAGY GGRCL

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MELNEHSFLE ELLALRRDSS WETIPPEMNE FLSSSTWSSF DYFDNQNPPP FFPQSSSGQE  60
FSPPFEPNLN NYHNNTTFNE VYYPLGFGTD ELLSAPQVTT DSSYNTLGDT PPFPVQEDNN  120
PWSMLEEEEL SLLGDEIHDL ETQAAACKVE PTQSSSSPEA APVFNMGMCV ERNSRTSKKL  180
QGQPSKNLMA ERRRRKRLND RLSMLRSIVP KISKMDRTSI LGDTIDYMKE LLDRINNLQH  240
EIEESGSDQL NVMRLFKDMK PNELLVRNSP KFDVQRRNVD TRIEICCAGK PGLLLSTVTT  300
LETLGLEIQQ CVISCFNDFA MQASCSEGLD QRTLVTSEDM KQALFRNAGY GGRCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	191	198	ERRRRKRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	8e-78	bHLH family protein