PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0230201

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 375aa MW: 43165.2 Da PI: 10.2855

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0230201	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.9	3.6e-11	138	182	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g W++eEd +l av+ +G g+W ++a+ +g gRt+ q +rw k RcHm_v2.0_Chr7g0230201 138 KGEWSKEEDAKLNSAVEVFGEGDWLSVASALG-GRTGTQSSNRWKK 182 799***************************.*********97 PP
2	Myb_DNA-binding	41.1	4.3e-13	191	236	1	46
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqk 46 +g+WT eEd l+ a+ ++Gg +W++Ia+ + g t qc++r+ + RcHm_v2.0_Chr7g0230201 191 KGKWTLEEDTCLIVAHILFGGTkNWNKIAQFVR-GQTQVQCRDRFVN 236 79****************99*******.********976 PP
3	Myb_DNA-binding	41.7	2.7e-13	245	288	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g WT+eEd +l a+ ++G W++++ +++ Rt+++c rw + RcHm_v2.0_Chr7g0230201 245 GEWTEEEDSILRAAIGEHGHC-WSKVSVCVP-QRTDNMCWRRWKVL 288 68***************99.*****.*********865 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MLTKFPDRKN WSKVEKENLL KGIRQQFQEM VLQYHGGNSN VNDIDDVLAS IKDLASMYVP 60 GRSGEEREAR WLNWEDPLIN HEPWTVDEDK RILELVQKQG VNDWIDIAPA SLVLKGINRT 120 PFQCLARNQR SLNAFILKGE WSKEEDAKLN SAVEVFGEGD WLSVASALGG RTGTQSSNRW 180 KKAIHPTRTR KGKWTLEEDT CLIVAHILFG GTKNWNKIAQ FVRGQTQVQC RDRFVNSLER 240 SLKFGEWTEE EDSILRAAIG EHGHCWSKVS VCVPQRTDNM CWRRWKVLFP EEVLLLREER 300 RIRKAALIRN FADREKERPA LGPNDFLVAE ATSTKTSTFP RKTGNIKKGS QSGKKNNISS 360 NCQVIKKIRP KRRKN

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MLTKFPDRKN WSKVEKENLL KGIRQQFQEM VLQYHGGNSN VNDIDDVLAS IKDLASMYVP  60
GRSGEEREAR WLNWEDPLIN HEPWTVDEDK RILELVQKQG VNDWIDIAPA SLVLKGINRT  120
PFQCLARNQR SLNAFILKGE WSKEEDAKLN SAVEVFGEGD WLSVASALGG RTGTQSSNRW  180
KKAIHPTRTR KGKWTLEEDT CLIVAHILFG GTKNWNKIAQ FVRGQTQVQC RDRFVNSLER  240
SLKFGEWTEE EDSILRAAIG EHGHCWSKVS VCVPQRTDNM CWRRWKVLFP EEVLLLREER  300
RIRKAALIRN FADREKERPA LGPNDFLVAE ATSTKTSTFP RKTGNIKKGS QSGKKNNISS  360
NCQVIKKIRP KRRKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.2	1e-100	MYB family protein