PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr7g0229011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 236aa MW: 26691 Da PI: 7.9732 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.8 | 2.6e-18 | 3 | 50 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT++Ed +lvd+vk +G g W++++++ g++R++k+c+ rw +yl RcHm_v2.0_Chr7g0229011 3 RGAWTAQEDSILVDYVKTHGEGKWSKVSKERGLKRCGKSCRMRWMNYL 50 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.8 | 3.9e-16 | 56 | 100 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ ++eE++l+ +++k+lG++ W++Ia +++ gRt+ ++k++w+++ RcHm_v2.0_Chr7g0229011 56 RGNISPEEEDLIMRLHKLLGNR-WSLIAGRLP-GRTDSEIKNHWNTV 100 7899******************.*********.***********985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence |
MNRGAWTAQE DSILVDYVKT HGEGKWSKVS KERGLKRCGK SCRMRWMNYL RPNIKRGNIS 60 PEEEDLIMRL HKLLGNRWSL IAGRLPGRTD SEIKNHWNTV IRRKIINDNK KQCQSENKKQ 120 NNKPSDSGSH LLLTADSDTV HMNPVKNKEL PSTVLQQSQN AGYLETDVNA EPTQDGNSGN 180 GTVVMEPKPS SDVSISSTEG NPPDDIMGNY LEELLRSDIP ALEFWKLCNF DNDTVV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 7e-56 | MYB family protein |