PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0227541

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 307aa MW: 34748.3 Da PI: 6.8895

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0227541	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	35.8	2.6e-11	106	195	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHn 86 kfY+ Y++ +GFs+rk+++ k + n + + + + ++e++k k+++ r + +r+gC a + ++ k ++k+ v+k+ ++Hn RcHm_v2.0_Chr7g0227541 106 KFYHLYSRVIGFSTRKDRKGKATINAKKQGLKEKGKTLIQAEKKKMKRNQCPRGKRYSRVGCMAGFGIRYCKeRKKYFVSKFITNHN 192 6**************9999855554433333333333344444445677789999*********999************ PP FAR1 87 Hel 89 H++ RcHm_v2.0_Chr7g0227541 193 HDV 195 *87 PP

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence
MENNEGGVCY TDHLYHSSFP SDEEVSDDDG LLQIGEDEEG FFCDGGEKGL GHTSEIGNDK 60 CHLMDMETLD GTNIGGCVDL NGKDYSNLNM DDMKDVVFSS VCEAEKFYHL YSRVIGFSTR 120 KDRKGKATIN AKKQGLKEKG KTLIQAEKKK MKRNQCPRGK RYSRVGCMAG FGIRYCKERK 180 KYFVSKFITN HNHDVAVSEE VQFLRSHRGV TDSVIAQVEA LQKAQVHISR IYENFGSMLV 240 FSHSQNHSWV INEKVSKFSC SIAPRFLISN ADTDILLLSD GTSRVEWLYP MVSNLTVRTL 300 WESITLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-11	FAR1 family protein